***************** FILE 3D_ALI - sequence alignment based on 3D superposition ****************
FT   file: sns.3D_ALI
DT    created at EMBL Sun Aug  4 00:20:25 1991      
NS    1  
FN    2sns  chain: -; Range(PDB):    1 -  141         resolution: 1.5 angstroms. 
NA    0  
NL    141  
DB    RELEASE 17.0 OF EMBL/SWISS-PROT WITH  20024 SEQUENCES                 
TH    threshold_1 - % identity       0.35
TH    threshold_2 - % alignment      0.35
AU    This file was generated by the program CHARON
AU    Stefano Pascarella and Patrick Argos, EMBL, Postfach 10 22 09, 6900 Heidelberg, Germany
AU    
NT    The sequence alignments and part of the notation included in this file has been taken from the HSSP files: 
NT    Sander C. and Schneider R. : Database of homology-derived protein structures. Protins, in press.
NT    Notation:    seq_id = sequence identifyer eithr from PDB or from SWISSPROT.
NT                 %ide = percentage of identical residues.
NT                 ifir, ilast = first and last residue of the alignment in the test sequence.
NT			jfir, jlast = first and last residue of the alignment in the aligned protein.
NT                 lali = length of the alignment excluding insertions and deletions.
NT                 ngap, lgap = number and total length of all insertions and deletions.
NT                 lseq2 = length of the entire sequence of the aligned protein.
NT                 HSP = numeration in the HSSP file.
NT                 PDB = numeration in the PDB file.
NT                 A = aminoacid sequence.
NT                 STRUCT = secondary structure assignment as found in DSSP file.
NT                 PHI, PSI, CHIx = dihedral angles phi, psi and chi1, chi2....
NT                 ACC = accessibility as found in DSSPfiles.
NT     Symbols:    '-'  indicates a gap in the structural alignments.
NT                 '?'  indicates a structural gap: the sequence is known but the structure is unresolved.
NT                 ' ' indictes a gap in the sequence alignments.
NT                 pairs of lower case letters in the alignment bracket an insertion in the sequence.
EN

     ..............................................................................................................................
          seq_id          %ide  ifir  ilas  jfir  jlas  lali  ngap  lgap  lseq
->   1. 2sns

     ..............................................................................................................................
####
CC    Structure superposition
NB    1  blocks
NC    3 structures per block
                                  2sns                                                                            

    HSP   PDB A  STRUCT     PHI    PSI   ACC |HSP   PDB A  STRUCT     PHI    PSI   ACC |HSP   PDB A  STRUCT     PHI    PSI   ACC |
   |-----------------------------------------|-----------------------------------------|-----------------------------------------|
  1.   1    1 A    >       360.0  -23.7  111 |
  2.   2    2 T T  4  -     22.6 -127.4  136 |
  3.   3    3 S T  4 S+    -87.5  -30.4  104 |
  4.   4    4 T T  4 S-     -0.6  -70.2   50 |
  5.   5    5 K    <  -    104.7   53.4  166 |
  6.   6    6 K S    S+     99.3 -127.9  137 |
  7.   7    7 L S    S-    -81.1  143.0   25 |
  8.   8    8 H       -   -100.5  151.4  104 |
  9.   9    9 K E     -A  -115.0  112.8   77 |
 10.  10   10 E E     -A  -101.3  136.0   40 |
 11.  11   11 P E     +A   -52.9 -173.5   97 |
 12.  12   12 A E     -A   167.4  160.9   18 |
 13.  13   13 T       -   -115.9  132.3   92 |
 14.  14   14 L E     +D   -73.6  131.2   52 |
 15.  15   15 I E     -   -107.9  -69.6   72 |
 16.  16   16 K E     -D  -149.9  131.0  125 |
 17.  17   17 A E     -D   -95.3  130.3   24 |
 18.  18   18 I       -    -83.0  -62.1   73 |
 19.  19   19 D S    S-   -150.6 -155.7   10 |
 20.  20   20 G S    S+    -58.6  -60.5    0 |
 21.  21   21 D S    S+    -79.9  -10.1    9 |
 22.  22   22 T E     + E -133.9  128.4    9 |
 23.  23   23 V E     -DE -146.6  160.3    9 |
 24.  24   24 K E     +DE  -96.4  121.6   62 |
 25.  25   25 L E     -DE -122.2  155.9    0 |
 26.  26   26 M   >   +    -99.1   57.4   52 |
 27.  27   27 Y T 3  S-    -66.8  103.9   36 |
 28.  28   28 K T 3  S-     63.3   80.5  131 |
 29.  29   29 G S <  S+     22.5  122.4   56 |
 30.  30   30 Q S    S-    122.5  119.7  146 |
 31.  31   31 P       +    -66.1  145.3   80 |
 32.  32   32 M E     -E  -165.4  146.5   62 |
 33.  33   33 T E     -E  -101.8  141.8   49 |
 34.  34   34 F E     -Ef -120.7  143.5    9 |
 35.  35   35 R E     -Ef -106.8  135.6   17 |
 36.  36   36 L E     - f  -74.6  105.1    3 |
 37.  37   37 L S    S+    -52.4  137.1    8 |
 38.  38   38 L S    S+     45.4   84.5    7 |
 39.  39   39 V       -    164.9  138.1    0 |
 40.  40   40 D B     -I  -138.3  135.4   35 |
 41.  41   41 T       -   -106.0  148.9    0 |
 42.  42   42 P       -    -46.8  121.8    9 |
 43.  43   43 E       +    -42.0  151.7   37 |
 44.  44   44 T       +   -130.8  -40.2   38 |
 45.  45   45 K S    S+   -108.7 -155.5  127 |
 46.  46   46 H       -     53.0  119.8  108 |
 47.  47   47 P S    S+    -62.9  -37.4  120 |
 48.  48   48 K S    S-    -38.9   54.4  113 |
 49.  49   49 K S    S-    146.9 -109.5   98 |
 50.  50   50 G       -    156.3 -161.0   34 |
 51.  51   51 V       -    -72.6   98.2  105 |
 52.  52   52 E   >   -    -63.9  124.5   57 |
 53.  53   53 K T 3  S+    -38.9  119.3  153 |
 54.  54   54 Y T 3  S+     89.8   25.9   44 |
 55.  55   55 G S <> S+    -92.8  -61.1    0 |
 56.  56   56 P T >4 S+    -50.3  -56.9   68 |
 57.  57   57 E G >4 S+    -58.5  -55.5   98 |
 58.  58   58 A G 34 S+    -40.1  -17.8    0 |
 59.  59   59 S G <X S+   -105.6  -11.1   20 |
 60.  60   60 A T <4 S+    -87.4   21.7   67 |
 61.  61   61 F T  > S+   -125.1  -50.9   58 |
 62.  62   62 T H  > S+    -60.3  -47.4    2 |
 63.  63   63 K H >X S+    -42.4  -92.7   92 |
 64.  64   64 K H >>>S+    -35.6  -76.4   92 |
 65.  65   65 M H 3<5S+    -19.1  -41.2   34 |
 66.  66   66 V H <<5S+    -82.8  -39.3    7 |
 67.  67   67 E H <<5S+    -67.9  -51.2  104 |
 68.  68   68 N T  <5S+    -63.0  -12.8  120 |
 69.  69   69 A     < -    -84.4  142.4   14 |
 70.  70   70 K S    S+    -91.3  -15.0  183 |
 71.  71   71 K       -   -163.5  156.3  138 |
 72.  72   72 I E     -A  -154.2  152.1    4 |
 73.  73   73 E E     -AB -126.6  162.5   61 |
 74.  74   74 V E     -A  -122.2  138.3    0 |
 75.  75   75 E E     -A  -115.2  116.2   18 |
 76.  76   76 F B     -G   -81.9  141.9   42 |
 77.  77   77 N       -    -72.7 -135.3    6 |
 78.  78   78 K S    S+   -130.3   -2.9  109 |
 79.  79   79 G S    S-    -96.8 -140.6   18 |
 80.  80   80 Q       -    -68.6  148.5  101 |
 81.  81   81 R S    S+    -82.9  -27.2  112 |
 82.  82   82 T B    S-H  -147.1  158.7   64 |
 83.  83   83 D   >   -    -97.5  168.3   34 |
 84.  84   84 K T 3  S+    -62.0   75.2  172 |
 85.  85   85 Y T 3  S-   -174.4  -28.1  173 |
 86.  86   86 G S <  S+    105.7   -2.3   44 |
 87.  87   87 R       -    -93.8  111.7   72 |
 88.  88   88 G E     -fH  -70.3  151.2    2 |
 89.  89   89 L E     +f  -116.0  129.2   29 |
 90.  90   90 A E     -fG -161.1  169.1    0 |
 91.  91   91 Y       -    -90.8   28.7    0 |
 92.  92   92 I       -      1.8  126.2    4 |
 93.  93   93 Y E     -BC -108.7  143.8   13 |
 94.  94   94 A E >  S- C -136.1   97.4    3 |
 95.  95   95 D T 3  S-     66.1   30.6   73 |
 96.  96   96 G T 3  S+     82.0    7.5   49 |
 97.  97   97 K E <   -C   -98.3  117.8   97 |
 98.  98   98 M E  >  -C   -74.1   93.4   11 |
 99.  99   99 V H  > S+    -47.9  -54.8    9 |
100. 100  100 N H  > S+    -50.9  -48.4    0 |
101. 101  101 E H  > S+    -76.3  -45.0   38 |
102. 102  102 A H  X S+    -46.5  -50.9   12 |
103. 103  103 L H  <>S+    -66.2  -32.1    0 |
104. 104  104 V H ><5S+    -70.2  -46.9    0 |
105. 105  105 R H 3<5S+    -62.6  -14.2   79 |
106. 106  106 Q T 3<5S-    -97.8   -7.7   76 |
107. 107  107 G T < 5S+     81.4   17.1    0 |
108. 108  108 L S   <S+   -101.0   -2.4   13 |
109. 109  109 A       -   -151.1  164.2    0 |
110. 110  110 K B     -I  -124.9  153.9   78 |
111. 111  111 V       +    -79.9  104.9   32 |
112. 112  112 A       +   -128.2  147.5   19 |
113. 113  113 Y       -     57.6  106.5  106 |
114. 114  114 V       -   -111.2   -7.3   40 |
115. 115  115 Y       -     19.4  133.8  135 |
116. 116  116 K S    S-    -99.9  114.4  163 |
117. 117  117 P S    S+   -114.0   36.7   66 |
118. 118  118 N S    S+    -77.8   51.3    3 |
119. 119  119 N   >   +   -152.2   50.5   26 |
120. 120  120 T T 3  S+    -81.0   52.5   44 |
121. 121  121 H T 3> S+   -170.8   14.1   48 |
122. 122  122 E H X> S+    -45.0  -97.6   27 |
123. 123  123 Q H 3> S+    -19.7  -37.8  126 |
124. 124  124 H H 3> S+    -56.0  -71.3   79 |
125. 125  125 L H <X S+    -62.4  -17.7    4 |
126. 126  126 R H  X S+    -67.2  -53.5   92 |
127. 127  127 K H  X S+    -57.7  -38.9  124 |
128. 128  128 S H >X S+    -61.2  -54.1    9 |
129. 129  129 E H 3< S+    -51.9  -32.8   24 |
130. 130  130 A H 3X S+    -71.3  -34.4   47 |
131. 131  131 Q H <X S+    -74.3  -43.1   72 |
132. 132  132 A H  <>S+    -71.8   -7.9    0 |
133. 133  133 K H  45S+   -107.0  -29.0  106 |
134. 134  134 K H  <5S+    -71.8  -15.7  119 |
135. 135  135 E T  <5S-   -111.8  -35.5   78 |
136. 136  136 K T   5 -    100.0   77.7  127 |
137. 137  137 L    >< -   -101.2  132.3   37 |
138. 138  138 N T >4 S+     36.5 -116.5   46 |
139. 139  139 I T 34 S+    -37.0  -85.3   54 |
140. 140  140 W T 34       -35.3   -4.4   58 |
141. 141  141 S   <<       -64.5  360.0   92 |
   |-----------------------------------------|-----------------------------------------|-----------------------------------------|
####


$$$$
CC   Sequence alignments  -  from 1
NB   1 blocks
NC   120 sequences per block

     .........|.........|.........|.........|.........|.........|.........|.........|.........|.........|.........|.........|......
  1. A
  2. T
  3. S
  4. T
  5. K
  6. K
  7. L
  8. H
  9. K
 10. E
 11. P
 12. A
 13. T
 14. L
 15. I
 16. K
 17. A
 18. I
 19. D
 20. G
 21. D
 22. T
 23. V
 24. K
 25. L
 26. M
 27. Y
 28. K
 29. G
 30. Q
 31. P
 32. M
 33. T
 34. F
 35. R
 36. L
 37. L
 38. L
 39. V
 40. D
 41. T
 42. P
 43. E
 44. T
 45. K
 46. H
 47. P
 48. K
 49. K
 50. G
 51. V
 52. E
 53. K
 54. Y
 55. G
 56. P
 57. E
 58. A
 59. S
 60. A
 61. F
 62. T
 63. K
 64. K
 65. M
 66. V
 67. E
 68. N
 69. A
 70. K
 71. K
 72. I
 73. E
 74. V
 75. E
 76. F
 77. N
 78. K
 79. G
 80. Q
 81. R
 82. T
 83. D
 84. K
 85. Y
 86. G
 87. R
 88. G
 89. L
 90. A
 91. Y
 92. I
 93. Y
 94. A
 95. D
 96. G
 97. K
 98. M
 99. V
100. N
101. E
102. A
103. L
104. V
105. R
106. Q
107. G
108. L
109. A
110. K
111. V
112. A
113. Y
114. V
115. Y
116. K
117. P
118. N
119. N
120. T
121. H
122. E
123. Q
124. H
125. L
126. R
127. K
128. S
129. E
130. A
131. Q
132. A
133. K
134. K
135. E
136. K
137. L
138. N
139. I
140. W
141. S

     .........|.........|.........|.........|.........|.........|.........|.........|.........|.........|.........|.........|......
%%%%
CC    Chi angles
NB     1  blocks
NC     3  structures per block
                                  2sns

    HSP   PDB A    CHI1   CHI2   CHI3   CHI4 |HSP   PDB A    CHI1   CHI2   CHI3   CHI4 |HSP   PDB A    CHI1   CHI2   CHI3   CHI4 |
   |-----------------------------------------|-----------------------------------------|-----------------------------------------|
  1.   1    1 A -999.00-999.00-999.00-999.00 |
  2.   2    2 T   65.86-999.00-999.00-999.00 |
  3.   3    3 S  -15.97-999.00-999.00-999.00 |
  4.   4    4 T -130.97-999.00-999.00-999.00 |
  5.   5    5 K -151.34  15.07-143.42 -22.60 |
  6.   6    6 K -174.17  59.10  54.24-119.54 |
  7.   7    7 L  -47.55 178.20-999.00-999.00 |
  8.   8    8 H -163.27  50.12-999.00-999.00 |
  9.   9    9 K  -64.22-162.61 154.74 168.38 |
 10.  10   10 E -104.88 123.77 -19.53-999.00 |
 11.  11   11 P -999.00-999.00-999.00-999.00 |
 12.  12   12 A -999.00-999.00-999.00-999.00 |
 13.  13   13 T  -21.39-999.00-999.00-999.00 |
 14.  14   14 L  174.47-112.12-999.00-999.00 |
 15.  15   15 I  -71.96-166.12-999.00-999.00 |
 16.  16   16 K -138.83-125.17-140.50  73.54 |
 17.  17   17 A -999.00-999.00-999.00-999.00 |
 18.  18   18 I  -32.92-111.91-999.00-999.00 |
 19.  19   19 D   52.48 158.94-999.00-999.00 |
 20.  20   20 G -999.00-999.00-999.00-999.00 |
 21.  21   21 D   83.00-173.60-999.00-999.00 |
 22.  22   22 T  -50.20-999.00-999.00-999.00 |
 23.  23   23 V  -15.08-999.00-999.00-999.00 |
 24.  24   24 K  -80.54 176.43 -57.87-163.37 |
 25.  25   25 L  -65.09 176.75-999.00-999.00 |
 26.  26   26 M -163.28 109.11 -98.62-999.00 |
 27.  27   27 Y  161.33  72.11-999.00-999.00 |
 28.  28   28 K -161.42 128.33   7.02 111.33 |
 29.  29   29 G -999.00-999.00-999.00-999.00 |
 30.  30   30 Q  -83.53 -96.25  54.30-999.00 |
 31.  31   31 P -999.00-999.00-999.00-999.00 |
 32.  32   32 M -126.23-129.17 -64.37-999.00 |
 33.  33   33 T   98.99-999.00-999.00-999.00 |
 34.  34   34 F  -91.27  84.79-999.00-999.00 |
 35.  35   35 R -156.42  22.00 174.75  85.84 |
 36.  36   36 L  -66.59-155.59-999.00-999.00 |
 37.  37   37 L  -71.36 173.08-999.00-999.00 |
 38.  38   38 L   22.36  85.34-999.00-999.00 |
 39.  39   39 V  154.69-999.00-999.00-999.00 |
 40.  40   40 D  171.09  29.04-999.00-999.00 |
 41.  41   41 T   26.89-999.00-999.00-999.00 |
 42.  42   42 P -999.00-999.00-999.00-999.00 |
 43.  43   43 E -148.73  -4.42  85.86-999.00 |
 44.  44   44 T  122.19-999.00-999.00-999.00 |
 45.  45   45 K  -76.86 152.82-164.77  20.54 |
 46.  46   46 H -154.76  97.89-999.00-999.00 |
 47.  47   47 P -999.00-999.00-999.00-999.00 |
 48.  48   48 K  137.88 -66.91-124.41-177.91 |
 49.  49   49 K -140.51 173.98  10.71  54.45 |
 50.  50   50 G -999.00-999.00-999.00-999.00 |
 51.  51   51 V   99.86-999.00-999.00-999.00 |
 52.  52   52 E  -78.53 132.29 -65.98-999.00 |
 53.  53   53 K  -95.73-111.64  93.33 177.59 |
 54.  54   54 Y  -54.13 -71.47-999.00-999.00 |
 55.  55   55 G -999.00-999.00-999.00-999.00 |
 56.  56   56 P -999.00-999.00-999.00-999.00 |
 57.  57   57 E    8.03 -95.44 -20.11-999.00 |
 58.  58   58 A -999.00-999.00-999.00-999.00 |
 59.  59   59 S  -40.42-999.00-999.00-999.00 |
 60.  60   60 A -999.00-999.00-999.00-999.00 |
 61.  61   61 F -170.88  87.50-999.00-999.00 |
 62.  62   62 T  111.45-999.00-999.00-999.00 |
 63.  63   63 K  151.40-177.50-101.50 -53.79 |
 64.  64   64 K  113.41-150.51 -72.09 -29.69 |
 65.  65   65 M -170.60-179.47-173.49-999.00 |
 66.  66   66 V -125.89-999.00-999.00-999.00 |
 67.  67   67 E  -70.39-172.63   1.63-999.00 |
 68.  68   68 N  -87.92-166.66-999.00-999.00 |
 69.  69   69 A -999.00-999.00-999.00-999.00 |
 70.  70   70 K   59.13-140.13-155.07-147.61 |
 71.  71   71 K   84.21-173.84 147.92 171.51 |
 72.  72   72 I  -61.56 142.55-999.00-999.00 |
 73.  73   73 E  -27.76 151.69  93.69-999.00 |
 74.  74   74 V  -85.58-999.00-999.00-999.00 |
 75.  75   75 E -150.95-176.80-157.14-999.00 |
 76.  76   76 F  -83.61 120.93-999.00-999.00 |
 77.  77   77 N -142.75 156.66-999.00-999.00 |
 78.  78   78 K  -57.55-159.43 -95.87 115.99 |
 79.  79   79 G -999.00-999.00-999.00-999.00 |
 80.  80   80 Q  -35.67  43.21 -12.78-999.00 |
 81.  81   81 R  -63.01 -66.04 167.31-125.08 |
 82.  82   82 T   90.80-999.00-999.00-999.00 |
 83.  83   83 D   74.17  23.21-999.00-999.00 |
 84.  84   84 K  100.89-140.15 143.55 171.12 |
 85.  85   85 Y  -86.14 118.64-999.00-999.00 |
 86.  86   86 G -999.00-999.00-999.00-999.00 |
 87.  87   87 R   -7.18 176.15 -71.42-177.94 |
 88.  88   88 G -999.00-999.00-999.00-999.00 |
 89.  89   89 L  -24.80 136.10-999.00-999.00 |
 90.  90   90 A -999.00-999.00-999.00-999.00 |
 91.  91   91 Y  -39.16 -98.36-999.00-999.00 |
 92.  92   92 I  -63.22  90.96-999.00-999.00 |
 93.  93   93 Y  -72.96 -91.60-999.00-999.00 |
 94.  94   94 A -999.00-999.00-999.00-999.00 |
 95.  95   95 D  -83.48 125.04-999.00-999.00 |
 96.  96   96 G -999.00-999.00-999.00-999.00 |
 97.  97   97 K -116.08 104.61 -73.40  29.08 |
 98.  98   98 M -109.29-114.05-116.58-999.00 |
 99.  99   99 V -172.03-999.00-999.00-999.00 |
100. 100  100 N  -16.84  13.26-999.00-999.00 |
101. 101  101 E   99.84  90.56  -0.05-999.00 |
102. 102  102 A -999.00-999.00-999.00-999.00 |
103. 103  103 L -109.49  21.54-999.00-999.00 |
104. 104  104 V -179.42-999.00-999.00-999.00 |
105. 105  105 R -129.50-105.12 136.63-131.85 |
106. 106  106 Q  -86.51 -43.89 -21.01-999.00 |
107. 107  107 G -999.00-999.00-999.00-999.00 |
108. 108  108 L  -58.56-153.86-999.00-999.00 |
109. 109  109 A -999.00-999.00-999.00-999.00 |
110. 110  110 K -156.83 175.04  -5.63 -31.13 |
111. 111  111 V    0.03-999.00-999.00-999.00 |
112. 112  112 A -999.00-999.00-999.00-999.00 |
113. 113  113 Y  -21.47  64.18-999.00-999.00 |
114. 114  114 V   -6.40-999.00-999.00-999.00 |
115. 115  115 Y  -47.30-115.85-999.00-999.00 |
116. 116  116 K -101.44  45.77 134.17 -15.90 |
117. 117  117 P -999.00-999.00-999.00-999.00 |
118. 118  118 N -104.89   7.52-999.00-999.00 |
119. 119  119 N   62.67  79.13-999.00-999.00 |
120. 120  120 T  -85.86-999.00-999.00-999.00 |
121. 121  121 H  -97.76 -25.38-999.00-999.00 |
122. 122  122 E  -89.87-103.85-171.96-999.00 |
123. 123  123 Q  -25.41 -38.27  45.67-999.00 |
124. 124  124 H -172.57  66.58-999.00-999.00 |
125. 125  125 L  -50.44 -32.39-999.00-999.00 |
126. 126  126 R  -52.81 -86.44-158.98 173.13 |
127. 127  127 K  -72.93 136.17  47.42 -87.23 |
128. 128  128 S  -54.68-999.00-999.00-999.00 |
129. 129  129 E -134.55-169.25-165.49-999.00 |
130. 130  130 A -999.00-999.00-999.00-999.00 |
131. 131  131 Q -172.22  65.96-172.73-999.00 |
132. 132  132 A -999.00-999.00-999.00-999.00 |
133. 133  133 K -133.14-148.31-113.32-169.68 |
134. 134  134 K   59.78-166.83  -1.77  21.32 |
135. 135  135 E   27.18-137.53-114.15-999.00 |
136. 136  136 K   -2.24 -88.03 -73.38 170.67 |
137. 137  137 L  -81.40 -81.40-999.00-999.00 |
138. 138  138 N  -42.99 -82.98-999.00-999.00 |
139. 139  139 I  -31.84-156.05-999.00-999.00 |
140. 140  140 W  -42.43 125.61-999.00-999.00 |
141. 141  141 S -105.53-999.00-999.00-999.00 |
   |-----------------------------------------|-----------------------------------------|-----------------------------------------|
END.