CCAPD: Alignment (using alternative display 1) of Rad51/RadA/RecA

                                            10        20        30        40
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               ----------------------------------age---
A Archaeoglobus_fulgidus            ----------------------------------------
A Pyrococcus_abyssi                 ------------------------mimgkks---sdp---
============================================================================
A METHANOCOCCUS_VOLTAE              -------------------------------sdn------
A Methanococcus_jannaschii          itfiyffgniiyylpiysyinnykfmlmviimdd------
A Methanococcus_maripaludis         -------------------------------adv------
============================================================================
A SULFOLOBUS_SOLFATARICUS           ----------------------------------sne---
A Desulfurococcus_amylolyticus      ----------------------------------seeket
A Sulfolobus_acidocaldarius         ----------------------------------------
A Sulfolobus_tokodaii               ----------------------------------ndm---
A Aeropyrum_pernix-RADA             ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH3     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB6     ----------------------------------------
============================================================================
* HUMAN                             ----------------------------------------
* S_CEREVISIAE                      ----------------------------------sqv---
* Apis_mellifera                    ----------------------------------------
* Aspergillus_flavus                ----------------------------------------
* Aspergillus_fumigatus             ----------------------------------------
* Bovine                            ----------------------------------------
* C_elegans                         -------------saqasrqkk--sdqeqra---------
* Candida_albicans                  ----------------------tqteie-qv---dlh-ee
* Candida_glabrata                  ----------------------------------tev---
* Canis_lupus                       ----------------------------------------
* Chaetomium_globosum               ----------------------------------------
* Coccidioides_immitis              ----------------------------------------
* Coprinus_cinereus                 ----------------------------------------
* Cricetulus_griseus                ----------------------------------------
* Cryptococcus_neoformans           ----------------------------------------
* Danio_rerio                       ----------------------------------------
* Debaryomyces_hansenii             -------------tet------------------------
* D_melanogaster                    ----------------------------------------
* D_pseudoobscura                   ----------------------------------------
* Emericella_nidulans               ----------------------------------------
* Encephalitozoon_cuniculi          ----------------------------------------
* Eremothecium_gossypii             -sqvqehiiqdphssqynihatgaserqgss---eht-dg
* Chicken                           ----------------------------------------
* Gibberella_zeae                   ----------------------------------------
* Kluyveromyces_lactis              ----------------------------------------
* Mouse                             ----------------------------------------
* Neurospora_crassa                 ----------------sn----------------------
* Rabbit                            ----------------------------------------
* Pichia_angusta                    ---------------tqvaevnhitsneqqg---s-----
* Rat                               ----------------------------------------
* Schizosaccharomyces_pombe         --------------adtev-emqvsaadtnn---nen-gq
* Strongylocentrotus_purpuratus     ----------------------------------------
* Tetraodon_nigroviridis            ----------------------------------------
* Tribolium_castaneum               ----------------------------------------
* Ustilago_maydis                   ----------------------------------------
* X_tropicalis                      ----------------------------------------
* Yarrowia_lipolytica               ----------------------------------------
* X_laevis-RA51A                    ----------------------------------------
* X_laevis-RA51B                    ----------------------------------------
  Cryptosporidium_hominis           --------------stin----------------------
  Cryptosporidium_parvum            --------------stin----------------------
  Dictyostelium_discoideum          -------------asrqrqe--------------------
  Entamoeba_histolytica             ---------sakqiqrgseeelleseenlke---ke----
  Leishmania_donovani               qtrskakgrrgrpsarpsdevevvesqpqea---lqn-ee
  Leishmania_tropica                qtrskakgrrgrpsarpseevevvesqpqev---lqn-ee
  Plasmodium_berghei                -------------------------pamksa---n-----
  Plasmodium_falciparum             ----------------------------------------
  Tetrahymena_thermophila           ----------------------------------------
  Theileria_annulata                -------------------------ssd------------
  Theileria_parva                   -------------------------ssd------------
  Trypanosoma_brucei                ------------ntrtknkkrtkeviedevh---did-dt
  Trypanosoma_cruzi                 -------ntrskrgkrkgveevevheiants---pdp-va
P Arabidopsis_thaliana              ----------------------------------------
P Oryza_sativa                      ----------------------------------------
P Maize-R51A1                       ----------------------------------------
P Maize-R51A2                       ----------------------------------------
============================================================================
B E_COLI                            ----------------------------------ai----
B MYCOBACTERIUM_SMEGMATIS           ----------------------------------aqq---
B MYCOBACTERIUM_TUBERCULOSIS        ----------------------------------tq----
B Acinetobacter_calcoaceticus       ----------------------------------------
B Actinobacillus_pleuropneumoniae   -----asdnkkaqkntvtk---------------qi----
B Actinobacillus_succinogenes       -----atpndktk---------------------ps----
B Actinomyces_bovis                 ----------------------------------apq---
B Azotobacter_vinelandii            ----------------------------------------
B Bacillus_clausii                  ----------------------------------------
B Bacillus_halodurans               ----------------------------------------
B Bacillus_licheniformis            ----------------------------------------
B Bacillus_megaterium               ----------------------------------------
B Bacillus_subtilis                 ----------------------------------------
B Bordetella_pertussis              -----ddktsk-----------------------aa----
B Burkholderia_fungorum             -----eeskkgsa---------------------gl----
B Chromobacterium_violaceum         -----------------------------------a----
B Clostridium_acetobutylicum        ----------------------------------------
B Clostridium_thermocellum          -----------------------------------i----
B Colwellia_psychrerythraea         ----------------------------------------
B Corynebacterium_efficiens         -----atkkttkaa--------------------pk----
B Desulfotalea_psychrophila         -----v----------------------------gat---
B Enterococcus_faecalis             ----------------------------------------
B Haemophilus_ducreyi               -----aadkkaqkntatk----------------qi----
B Haemophilus_influenzae            ----------------------------------at----
B Histophilus_somni                 ----------------------------------at----
B Kineococcus_radiotolerans         ----------------------------------pa----
B Leifsonia_xyli                    -----------------------------------ps---
B Mannheimia_succiniciproducens     ----------------------------------at----
B Nitrosomonas_europaea             ----------------------------------------
B Nitrosomonas_eutropha             ----------------------------------------
B Oceanobacillus_iheyensis          ----------------------------------------
B Pasteurella_multocida             ----------------------------------at----
B Photobacterium_profundum          ----------------------------------------
B Photorhabdus_luminescens          ----------------------------------ai----
B Proteus_mirabilis                 ----------------------------------ai----
B Pseudomonas_cepacia               ----------------------------------------
B Pseudomonas_pseudomallei          -----eeskkgs----------------------gl----
B Shewanella_amazonensis            -----------------------------------ki---
B Shewanella_putrefaciens           ----------------------------------kv----
B Streptomyces_avermitilis          -----------------------------------a----
B Vibrio_alginolyticus              ----------------------------------------
B Vibrio_angustum                   ----------------------------------------
B Vibrio_cholerae                   ----------------------------------------
B Vibrio_fischeri                   ----------------------------------------
B Vibrio_parahaemolyticus           ----------------------------------------
B Vibrio_splendidus                 ----------------------------------------
B Vibrio_vulnificus                 ----------------------------------------
B Yersinia_enterocolitica           ----------------------------------ai----
B Cupriavidus_metallidurans-Q1LR74  -----ddkkaga----------------------gv----
B Cupriavidus_metallidurans-RECA    -----ddkkaga----------------------gv----
B Erwinia_carotovora-RECA           -----------------------------------ai---
B Erwinia_carotovora-RECA_ERWCT     -----------------------------------ai---
B Listeria_monocytogenes-RECA       ----------------------------------------
B Listeria_monocytogenes-RECA_LISMF ----------------------------------------
B Neisseria_gonorrhoeae-RECA        ----------------------------------------
B Neisseria_gonorrhoeae-RECA_VAR    ----------------------------------------
B Salmonella_typhi-RECA             ----------------------------------ai----
B Salmonella_typhi-RECA_SALPA       ----------------------------------ai----
B Streptomyces_coelicolor-RECA      -----------------------------------a----
B Streptomyces_coelicolor-RECA_STRL -----------------------------------a----
B Xylella_fastidiosa-RECA           ----------------------------------------
B Xylella_fastidiosa-RECA_XYLFT     ----------------------------------------
B Yersinia_pestis-RECA              ----------------------------------ai----
B Yersinia_pestis-RECA_YERPS        ----------------------------------ai----
B Mycobacterium_tuberculosis-RECA   ----------------------------------tq----
B Mycobacterium_tuberculosis-RECA_M ----------------------------------tq----
B Neisseria_meningitidis-RECA       ----------------------------------------
B Neisseria_meningitidis-RECA_NEIMA ----------------------------------------
B Neisseria_meningitidis-RECA_VAR   ----------------------------------------
B Xanthomonas_vasicola-RECA_XANAC   -----svspavsacaihrryispipksltri---tqm---
B Xanthomonas_vasicola-RECA_XANCP   -----svspavsacaihrryispipksltri---tqm---
B Xanthomonas_vasicola-YP_201580    -----svspavsacaihrryispipksltri---tqm---
B Pseudomonas_aeruginosa-Q48F94     ----------------------------------------
B Pseudomonas_aeruginosa-RECA       ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEF5 ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEFL ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPK ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPU ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSESM ----------------------------------------
============================================================================
B DEINOCOCCUS_RADIODURANS           ----------------------------------gsh---
B Deinococcus_geothermalis          ----------------------------------------
B Thermus_aquaticus-RECA            ----------------------------------------
B Thermus_aquaticus-RECA_THET2      ----------------------------------------
B Thermus_aquaticus-RECA_THET8      ----------------------------------------
B Thermus_aquaticus-RECA_THETH      ----------------------------------------
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                                            50        60        70        80
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               -----evke--idefeelgf-e-pateetpkkkkke----
A Archaeoglobus_fulgidus            -------------------s-e-esneet-----------
A Pyrococcus_abyssi                 -----avve--indvdelel-e-vgeevtskkkkke----
============================================================================
A METHANOCOCCUS_VOLTAE              ----------------------------------------
A Methanococcus_jannaschii          ----------------------------------------
A Methanococcus_maripaludis         ----------------------------------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           -veqk-----k-----------------------------
A Desulfurococcus_amylolyticus      ikers-----s-----------------------------
A Sulfolobus_acidocaldarius         -sndg-----k-----------------------------
A Sulfolobus_tokodaii               -ssdg-----k-----------------------------
A Aeropyrum_pernix-RADA             -gedk-----r-----------------------------
A Aeropyrum_pernix-RADA_VAR_OH1     -gedk-----r-----------------------------
A Aeropyrum_pernix-RADA_VAR_OH2     -gedk-----r-----------------------------
A Aeropyrum_pernix-RADA_VAR_OH3     -gedk-----r-----------------------------
A Aeropyrum_pernix-RADA_VAR_TB1     -gedq-----r-----------------------------
A Aeropyrum_pernix-RADA_VAR_TB2     -gedn-----r-----------------------------
A Aeropyrum_pernix-RADA_VAR_TB6     -gedk-----r-----------------------------
============================================================================
* HUMAN                             ----------------------------------------
* S_CEREVISIAE                      -----qeqh--isesqlqy-g-ngslmstvpadlsqsvvd
* Apis_mellifera                    ----------------------------------------
* Aspergillus_flavus                ----------------------------------------
* Aspergillus_fumigatus             ----------------------------------------
* Bovine                            ----------------------------------------
* C_elegans                         ----------------------------------------
* Candida_albicans                  g---------------------------------------
* Candida_glabrata                  -----hedhg-vpdsqv-n----vspistapaettqs---
* Canis_lupus                       ----------------------------------------
* Chaetomium_globosum               ----------------------------------------
* Coccidioides_immitis              ----------------------------------------
* Coprinus_cinereus                 ----------------------------------------
* Cricetulus_griseus                ----------------------------------------
* Cryptococcus_neoformans           ----------------------------------------
* Danio_rerio                       ----------------------------------------
* Debaryomyces_hansenii             ----------------------------------------
* D_melanogaster                    ----------------------------------------
* D_pseudoobscura                   ----------------------------------------
* Emericella_nidulans               ----------------------------------------
* Encephalitozoon_cuniculi          ----------------------------------------
* Eremothecium_gossypii             d---------------------------------------
* Chicken                           ----------------------------------------
* Gibberella_zeae                   ----------------------------------------
* Kluyveromyces_lactis              -------sq--veevqttq-g-hsqlmvsr----------
* Mouse                             ----------------------------------------
* Neurospora_crassa                 ----------------------------------------
* Rabbit                            ----------------------------------------
* Pichia_angusta                    ----------------------------------------
* Rat                               ----------------------------------------
* Schizosaccharomyces_pombe         a---------------------------------------
* Strongylocentrotus_purpuratus     ----------------------------------------
* Tetraodon_nigroviridis            ----------------------------------------
* Tribolium_castaneum               ----------------------------------------
* Ustilago_maydis                   ----------------------------------------
* X_tropicalis                      ----------------------------------------
* Yarrowia_lipolytica               ----------------------------------------
* X_laevis-RA51A                    ----------------------------------------
* X_laevis-RA51B                    ----------------------------------------
  Cryptosporidium_hominis           ----------------------------------------
  Cryptosporidium_parvum            ----------------------------------------
  Dictyostelium_discoideum          ----------------------------------------
  Entamoeba_histolytica             ----------------------------------------
  Leishmania_donovani               q---------------------------------------
  Leishmania_tropica                q---------------------------------------
  Plasmodium_berghei                ----------------------------------------
  Plasmodium_falciparum             ----------------------------------------
  Tetrahymena_thermophila           ----------------------------------------
  Theileria_annulata                ----------------------------------------
  Theileria_parva                   ----------------------------------------
  Trypanosoma_brucei                a---------------------------------------
  Trypanosoma_cruzi                 a---------------------------------------
P Arabidopsis_thaliana              ----------------------------------------
P Oryza_sativa                      ----------------------------------------
P Maize-R51A1                       ----------------------------------------
P Maize-R51A2                       ----------------------------------------
============================================================================
B E_COLI                            ----------------------------------------
B MYCOBACTERIUM_SMEGMATIS           ----------------------------------------
B MYCOBACTERIUM_TUBERCULOSIS        ----------------------------------------
B Acinetobacter_calcoaceticus       ----------------------------------------
B Actinobacillus_pleuropneumoniae   ----------------------------------------
B Actinobacillus_succinogenes       ----------------------------------------
B Actinomyces_bovis                 ----------------------------------------
B Azotobacter_vinelandii            ----------------------------------------
B Bacillus_clausii                  ----------------------------------------
B Bacillus_halodurans               ----------------------------------------
B Bacillus_licheniformis            ----------------------------------------
B Bacillus_megaterium               ----------------------------------------
B Bacillus_subtilis                 ----------------------------------------
B Bordetella_pertussis              ----------------------------------------
B Burkholderia_fungorum             ----------------------------------------
B Chromobacterium_violaceum         ----------------------------------------
B Clostridium_acetobutylicum        ----------------------------------------
B Clostridium_thermocellum          ----------------------------------------
B Colwellia_psychrerythraea         ----------------------------------------
B Corynebacterium_efficiens         ----------------------------------------
B Desulfotalea_psychrophila         ----------------------------------------
B Enterococcus_faecalis             ----------------------------------------
B Haemophilus_ducreyi               ----------------------------------------
B Haemophilus_influenzae            ----------------------------------------
B Histophilus_somni                 ----------------------------------------
B Kineococcus_radiotolerans         ----------------------------------------
B Leifsonia_xyli                    ----------------------------------------
B Mannheimia_succiniciproducens     ----------------------------------------
B Nitrosomonas_europaea             ----------------------------------------
B Nitrosomonas_eutropha             ----------------------------------------
B Oceanobacillus_iheyensis          ----------------------------------------
B Pasteurella_multocida             ----------------------------------------
B Photobacterium_profundum          ----------------------------------------
B Photorhabdus_luminescens          ----------------------------------------
B Proteus_mirabilis                 ----------------------------------------
B Pseudomonas_cepacia               ----------------------------------------
B Pseudomonas_pseudomallei          ----------------------------------------
B Shewanella_amazonensis            ----------------------------------------
B Shewanella_putrefaciens           ----------------------------------------
B Streptomyces_avermitilis          ----------------------------------------
B Vibrio_alginolyticus              ----------------------------------------
B Vibrio_angustum                   ----------------------------------------
B Vibrio_cholerae                   ----------------------------------------
B Vibrio_fischeri                   ----------------------------------------
B Vibrio_parahaemolyticus           ----------------------------------------
B Vibrio_splendidus                 ----------------------------------------
B Vibrio_vulnificus                 ----------------------------------------
B Yersinia_enterocolitica           ----------------------------------------
B Cupriavidus_metallidurans-Q1LR74  ----------------------------------------
B Cupriavidus_metallidurans-RECA    ----------------------------------------
B Erwinia_carotovora-RECA           ----------------------------------------
B Erwinia_carotovora-RECA_ERWCT     ----------------------------------------
B Listeria_monocytogenes-RECA       ----------------------------------------
B Listeria_monocytogenes-RECA_LISMF ----------------------------------------
B Neisseria_gonorrhoeae-RECA        ----------------------------------------
B Neisseria_gonorrhoeae-RECA_VAR    ----------------------------------------
B Salmonella_typhi-RECA             ----------------------------------------
B Salmonella_typhi-RECA_SALPA       ----------------------------------------
B Streptomyces_coelicolor-RECA      ----------------------------------------
B Streptomyces_coelicolor-RECA_STRL ----------------------------------------
B Xylella_fastidiosa-RECA           ----------------------------------------
B Xylella_fastidiosa-RECA_XYLFT     ----------------------------------------
B Yersinia_pestis-RECA              ----------------------------------------
B Yersinia_pestis-RECA_YERPS        ----------------------------------------
B Mycobacterium_tuberculosis-RECA   ----------------------------------------
B Mycobacterium_tuberculosis-RECA_M ----------------------------------------
B Neisseria_meningitidis-RECA       ----------------------------------------
B Neisseria_meningitidis-RECA_NEIMA ----------------------------------------
B Neisseria_meningitidis-RECA_VAR   ----------------------------------------
B Xanthomonas_vasicola-RECA_XANAC   ----------------------------------------
B Xanthomonas_vasicola-RECA_XANCP   ----------------------------------------
B Xanthomonas_vasicola-YP_201580    ----------------------------------------
B Pseudomonas_aeruginosa-Q48F94     ----------------------------------------
B Pseudomonas_aeruginosa-RECA       ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEF5 ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEFL ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPK ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPU ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSESM ----------------------------------------
============================================================================
B DEINOCOCCUS_RADIODURANS           -----mskd--atkeisap-t-d-----------------
B Deinococcus_geothermalis          ------skd--npkdfgtp-s-d-----------------
B Thermus_aquaticus-RECA            ----------------------------------------
B Thermus_aquaticus-RECA_THET2      ----------------------------------------
B Thermus_aquaticus-RECA_THET8      ----------------------------------------
B Thermus_aquaticus-RECA_THETH      ----------------------------------------
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                                            90       100       110       120
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxdxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               --------------------kii-r-si------------
A Archaeoglobus_fulgidus            --------------------kii---el------------
A Pyrococcus_abyssi                 --------------------kei-r-ti------------
============================================================================
A METHANOCOCCUS_VOLTAE              -----------------------l--td------------
A Methanococcus_jannaschii          -----------------------l--tq------------
A Methanococcus_maripaludis         -----------------------l--te------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           -----------------------n--ik------------
A Desulfurococcus_amylolyticus      -----------------------g--fi------------
A Sulfolobus_acidocaldarius         -----------------------k--vk------------
A Sulfolobus_tokodaii               -----------------------k--vk------------
A Aeropyrum_pernix-RADA             -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_OH1     -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_OH2     -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_OH3     -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_TB1     -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_TB2     -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_TB6     -----------------------e--ik------------
============================================================================
* HUMAN                             ------------------------a---mqmql-ean-a-
* S_CEREVISIAE                      gngngssedieatngsgdgg----g---lqeqa-eaq-ge
* Apis_mellifera                    -------------------s----a---masta-slq-gd
* Aspergillus_flavus                ------------------------t---aDmdt-qne-y-
* Aspergillus_fumigatus             ------------------------t---aDlet-qne-y-
* Bovine                            ------------------------a---mqmql-ean-a-
* C_elegans                         ------------------------a---dqall-naa-i-
* Candida_albicans                  ------------------------s---hpqni-nad-a-
* Candida_glabrata                  -----------stnrsmdynsge-q---lfhqe-qye-eg
* Canis_lupus                       ------------------------a---mqmql-ean-a-
* Chaetomium_globosum               ------------------------a---gheeydesg-s-
* Coccidioides_immitis              ------------------------g---aEael-dgy-e-
* Coprinus_cinereus                 ------------------------s---qgydg-sqi-p-
* Cricetulus_griseus                ------------------------a---mqmql-ean-a-
* Cryptococcus_neoformans           ------------sreqeqdp----f---vNqhg-e----e
* Danio_rerio                       -----------------------------amrn-asr-ve
* Debaryomyces_hansenii             ------------------------e---gaqtn-ehe-a-
* D_melanogaster                    -----------------------------Eklt-nvq-aq
* D_pseudoobscura                   -----------------------------------da-l-
* Emericella_nidulans               ------------------------t---aDmet-qne-f-
* Encephalitozoon_cuniculi          ------------------------s---eEyqy-q-----
* Eremothecium_gossypii             ------------------------v---iEvha-esg-r-
* Chicken                           ------------------------a---mqvqf-eas-t-
* Gibberella_zeae                   ------------------------s---qEhde-sqm-g-
* Kluyveromyces_lactis              -----teeqme-------------d---vqqri-qet-df
* Mouse                             ------------------------a---mqmql-eas-a-
* Neurospora_crassa                 ------------------------n---eEyde-sanme-
* Rabbit                            ------------------------a---mqmql-ean-a-
* Pichia_angusta                    ------------------------v---gEqel-sag-y-
* Rat                               ------------------------a---mqmql-ean-a-
* Schizosaccharomyces_pombe         ------------------------q---sNyey-dvn-v-
* Strongylocentrotus_purpuratus     ------------------------a---mqmh----n-a-
* Tetraodon_nigroviridis            ------------------------a---maaev-rgq-a-
* Tribolium_castaneum               --------------------------------e-asl-as
* Ustilago_maydis                   ------------------------s---qNaqd-paq-i-
* X_tropicalis                      ------------------------a---mqahy-eae-a-
* Yarrowia_lipolytica               ----------------------------------------
* X_laevis-RA51A                    ------------------------a---mqahy-eae-a-
* X_laevis-RA51B                    ------------------------a---mqahy-qae-a-
  Cryptosporidium_hominis           ------------------------p---nEvvn-enn-e-
  Cryptosporidium_parvum            ------------------------p---nEivn-enn-e-
  Dictyostelium_discoideum          ------------------------e---eEvdi-ene-q-
  Entamoeba_histolytica             ------------------------k---vNeee-hee-e-
  Leishmania_donovani               ------------------------e---pqqpq-qqq-s-
  Leishmania_tropica                ------------------------e---pqqqq-qqq-s-
  Plasmodium_berghei                ------------------------a---kEdti-sqt-c-
  Plasmodium_falciparum             ----------kqantkedks----q---kisns-sti-de
  Tetrahymena_thermophila           -----------------------------------ae-y-
  Theileria_annulata                ------------------------e---lslvk-een-s-
  Theileria_parva                   ------------------------e---lslvk-een-s-
  Trypanosoma_brucei                ------------------------f---dDaav-dav-n-
  Trypanosoma_cruzi                 ------------------------p---eqqqq-qqe-d-
P Arabidopsis_thaliana              ------------------------t---tmeqr-rnq-na
P Oryza_sativa                      ------------------------s---tsaaa-aaa-a-
P Maize-R51A1                       -----------------ssa----a---qqqqk-aaa-ae
P Maize-R51A2                       -----------------sss----s---ahqka-spp-ie
============================================================================
B E_COLI                            ------------------------d---eN----------
B MYCOBACTERIUM_SMEGMATIS           ------------------------a---pD----------
B MYCOBACTERIUM_TUBERCULOSIS        ------------------------a---pD----------
B Acinetobacter_calcoaceticus       ------------------------d---dN----------
B Actinobacillus_pleuropneumoniae   ------------------------dp--eq----------
B Actinobacillus_succinogenes       ------------------------a---eE----------
B Actinomyces_bovis                 ------------------------a---yD----------
B Azotobacter_vinelandii            ------------------------d---eN----------
B Bacillus_clausii                  ----------------------------sD----------
B Bacillus_halodurans               ----------------------------sD----------
B Bacillus_licheniformis            ----------------------------sD----------
B Bacillus_megaterium               ----------------------------nD----------
B Bacillus_subtilis                 ----------------------------sD----------
B Bordetella_pertussis              ------------------------a---aE----------
B Burkholderia_fungorum             ------------------------t---aE----------
B Chromobacterium_violaceum         ------------------------s---eD----------
B Clostridium_acetobutylicum        ------------------------d---nE----------
B Clostridium_thermocellum          ------------------------e---------------
B Colwellia_psychrerythraea         ------------------------k---dD----------
B Corynebacterium_efficiens         ------------------------g---dD----------
B Desulfotalea_psychrophila         ------------------------a---kD----------
B Enterococcus_faecalis             ------------------------a---bD----------
B Haemophilus_ducreyi               ------------------------dp--eq----------
B Haemophilus_influenzae            ------------------------q---eE----------
B Histophilus_somni                 ------------------------p---eE----------
B Kineococcus_radiotolerans         ------------------------p---aD----------
B Leifsonia_xyli                    ------------------------p---aD----------
B Mannheimia_succiniciproducens     ------------------------n---dE----------
B Nitrosomonas_europaea             ------------------------d---eN----------
B Nitrosomonas_eutropha             ------------------------d---eN----------
B Oceanobacillus_iheyensis          ----------------------------sD----------
B Pasteurella_multocida             ------------------------k---eE----------
B Photobacterium_profundum          ------------------------d---dN----------
B Photorhabdus_luminescens          ------------------------d---eN----------
B Proteus_mirabilis                 ------------------------d---eN----------
B Pseudomonas_cepacia               ------------------------t---aE----------
B Pseudomonas_pseudomallei          ------------------------t---aE----------
B Shewanella_amazonensis            ------------------------d---pN----------
B Shewanella_putrefaciens           ------------------------d---pN----------
B Streptomyces_avermitilis          ------------------------g---tD----------
B Vibrio_alginolyticus              ------------------------d---eN----------
B Vibrio_angustum                   ------------------------d---dN----------
B Vibrio_cholerae                   ------------------------d---eN----------
B Vibrio_fischeri                   ------------------------d---dN----------
B Vibrio_parahaemolyticus           ------------------------d---eN----------
B Vibrio_splendidus                 ------------------------d---eN----------
B Vibrio_vulnificus                 ------------------------d---eN----------
B Yersinia_enterocolitica           ------------------------d---eN----------
B Cupriavidus_metallidurans-Q1LR74  ------------------------s---aE----------
B Cupriavidus_metallidurans-RECA    ------------------------s---aE----------
B Erwinia_carotovora-RECA           ------------------------d---eN----------
B Erwinia_carotovora-RECA_ERWCT     ------------------------d---eN----------
B Listeria_monocytogenes-RECA       ----------------------------nD----------
B Listeria_monocytogenes-RECA_LISMF ----------------------------nD----------
B Neisseria_gonorrhoeae-RECA        ------------------------s---dD----------
B Neisseria_gonorrhoeae-RECA_VAR    ------------------------s---dD----------
B Salmonella_typhi-RECA             ------------------------d---eN----------
B Salmonella_typhi-RECA_SALPA       ------------------------d---eN----------
B Streptomyces_coelicolor-RECA      ------------------------g---tD----------
B Streptomyces_coelicolor-RECA_STRL ------------------------g---tD----------
B Xylella_fastidiosa-RECA           ------------------------d---eN----------
B Xylella_fastidiosa-RECA_XYLFT     ------------------------d---eN----------
B Yersinia_pestis-RECA              ------------------------d---eN----------
B Yersinia_pestis-RECA_YERPS        ------------------------d---eN----------
B Mycobacterium_tuberculosis-RECA   ------------------------t---pD----------
B Mycobacterium_tuberculosis-RECA_M ------------------------a---pD----------
B Neisseria_meningitidis-RECA       ------------------------s---dD----------
B Neisseria_meningitidis-RECA_NEIMA ------------------------s---dD----------
B Neisseria_meningitidis-RECA_VAR   ------------------------s---dD----------
B Xanthomonas_vasicola-RECA_XANAC   ------------------------d---eN----------
B Xanthomonas_vasicola-RECA_XANCP   ------------------------d---eN----------
B Xanthomonas_vasicola-YP_201580    ------------------------d---eN----------
B Pseudomonas_aeruginosa-Q48F94     ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA       ------------------------d---eN----------
B Pseudomonas_aeruginosa-RECA_PSEF5 ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA_PSEFL ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA_PSEPK ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA_PSEPU ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA_PSESM ------------------------d---dN----------
============================================================================
B DEINOCOCCUS_RADIODURANS           -----------------------a--ke------------
B Deinococcus_geothermalis          -----------------------s--ke------------
B Thermus_aquaticus-RECA            -----------------------e--en------------
B Thermus_aquaticus-RECA_THET2      -----------------------d--es------------
B Thermus_aquaticus-RECA_THET8      -----------------------d--es------------
B Thermus_aquaticus-RECA_THETH      -----------------------d--es------------
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxdxxxxxxxxxx

                                           130       140       150       160
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               ----------------------------------------
A Archaeoglobus_fulgidus            ----------------------------------------
A Pyrococcus_abyssi                 ----------------------------------------
============================================================================
A METHANOCOCCUS_VOLTAE              ----------------------------------------
A Methanococcus_jannaschii          ----------------------------------------
A Methanococcus_maripaludis         ----------------------------------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           ----------------------------------------
A Desulfurococcus_amylolyticus      ----------------------------------------
A Sulfolobus_acidocaldarius         ----------------------------------------
A Sulfolobus_tokodaii               ----------------------------------------
A Aeropyrum_pernix-RADA             ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH3     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB6     ----------------------------------------
============================================================================
* HUMAN                             --dts------v-----eee-----s---f--g-p--q--
* S_CEREVISIAE                      medea------y-----dea-----a---l--g-sf-v--
* Apis_mellifera                    eefee------y-----npq-----a-----------k--
* Aspergillus_flavus                --dds------g-----lpg-----p---g--a-p--t--
* Aspergillus_fumigatus             --des------g-----lpg-----p---g--a-p--t--
* Bovine                            --dts------v-----eee-----s---f--g-p--q--
* C_elegans                         --edn------a-----meq-----d---e--n-f--t--
* Candida_albicans                  --eve------a-----eed-----edvln--g-p--l--
* Candida_glabrata                  me---------------eda-----a---l--a-sf-v--
* Canis_lupus                       --dts------v-----eee-----s---f--g-p--q--
* Chaetomium_globosum               --aed------v-----gqt-----g---p--gap--t--
* Coccidioides_immitis              --dgd------c-----hap-----g------a-p--t--
* Coprinus_cinereus                 --egd------e-----edy-----q---f-sg-p--l--
* Cricetulus_griseus                --dts------v-----eee-----s---f--g-p--q--
* Cryptococcus_neoformans           aeeed------f-----e-------s---l--a-pm-l--
* Danio_rerio                       veaev------e-----eee-----n---f--g-p--q--
* Debaryomyces_hansenii             --smg------d-----eed-----g---ls-g-p--l--
* D_melanogaster                    qeeee------------eeg-----p---l----------
* D_pseudoobscura                   --tns------v-----eee-----e---n--g-p--l--
* Emericella_nidulans               --dds------g-----lpg-----p---g--a-p--t--
* Encephalitozoon_cuniculi          --dte------y-----hse-----s---i----------
* Eremothecium_gossypii             --gqg------y-----eed-----v---a--l-a--af-
* Chicken                           --dts------a-----eee-----s---f--g-p--e--
* Gibberella_zeae                   --eeg------g-----mpg-----p---g--a-p--t--
* Kluyveromyces_lactis              maee-------------ddv-----a---l--a-af-v--
* Mouse                             --dts------v-----eee-----s---f--g-p--q--
* Neurospora_crassa                 --dds------g-----ipn-----p---g--a-p--t--
* Rabbit                            --dts------v-----eee-----s---f--g-p--q--
* Pichia_angusta                    --hes------mvaeddedy-----s---a--g-p--v--
* Rat                               --dts------v-----eee-----s---f--g-p--q--
* Schizosaccharomyces_pombe         --qde------e-----dea-----a---a--g-p--m--
* Strongylocentrotus_purpuratus     --eqe------v-----see---------f--g-p--l--
* Tetraodon_nigroviridis            --eve------------eee-----n---f--g-p--q--
* Tribolium_castaneum               tdtvv------e-----dea-----k---n--g-gp-q--
* Ustilago_maydis                   --ged------d-----mge-----a---f--g-p--l--
* X_tropicalis                      -----------t-----eee-----n---f--g-p--q--
* Yarrowia_lipolytica               ----a------d-----eei-----e---r--a-ga-i--
* X_laevis-RA51A                    -----------t-----eee-----h---f--g-p--q--
* X_laevis-RA51B                    -----------t-----eee-----n---f--g-p--q--
  Cryptosporidium_hominis           --nqn------n-----lne-----t---vyng-p--l--
  Cryptosporidium_parvum            --nqn------n-----lne-----t---vyng-p--l--
  Dictyostelium_discoideum          --qqe------e-----eee-----e---e--e-e--esy
  Entamoeba_histolytica             --eee------e-----eee-----e---n--a-a--v--
  Leishmania_donovani               --tdm------a-----epn-----a---s--g-f--r--
  Leishmania_tropica                --tdm------a-----epn-----a---s--g-f--r--
  Plasmodium_berghei                --dns------t-----tedvdehly---t--g-p--l--
  Plasmodium_falciparum             ieeeq------l-----ytg-----p---l----------
  Tetrahymena_thermophila           --aed------v-----eqs-----d------g-p--m--
  Theileria_annulata                --mgv------s-----esg-----s---q--n-p--q--
  Theileria_parva                   --mgv------s-----etg-----s---q--n-p--q--
  Trypanosoma_brucei                --dntqemqqqv-----gda-----a---g--g-psfr--
  Trypanosoma_cruzi                 --qqn------v-----dga-----n---n--g-g-fr--
P Arabidopsis_thaliana              vqqqd------d-----eet-----q---h--g-pf----
P Oryza_sativa                      --eqq------q-----eeg-----e---h--g-p--f--
P Maize-R51A1                       qe----------------ev-----e---h--g-pf----
P Maize-R51A2                       ee----------------at-----e---h--g-pf----
============================================================================
B E_COLI                            ----------------------------------------
B MYCOBACTERIUM_SMEGMATIS           ----------------------------------------
B MYCOBACTERIUM_TUBERCULOSIS        ----------------------------------------
B Acinetobacter_calcoaceticus       ----------------------------------------
B Actinobacillus_pleuropneumoniae   ----------------------------------------
B Actinobacillus_succinogenes       ----------------------------------------
B Actinomyces_bovis                 ----------------------------------------
B Azotobacter_vinelandii            ----------------------------------------
B Bacillus_clausii                  ----------------------------------------
B Bacillus_halodurans               ----------------------------------------
B Bacillus_licheniformis            ----------------------------------------
B Bacillus_megaterium               ----------------------------------------
B Bacillus_subtilis                 ----------------------------------------
B Bordetella_pertussis              ----------------------------------------
B Burkholderia_fungorum             ----------------------------------------
B Chromobacterium_violaceum         ----------------------------------------
B Clostridium_acetobutylicum        ----------------------------------------
B Clostridium_thermocellum          ----------------------------------------
B Colwellia_psychrerythraea         ----------------------------------------
B Corynebacterium_efficiens         ----------------------------------------
B Desulfotalea_psychrophila         ----------------------------------------
B Enterococcus_faecalis             ----------------------------------------
B Haemophilus_ducreyi               ----------------------------------------
B Haemophilus_influenzae            ----------------------------------------
B Histophilus_somni                 ----------------------------------------
B Kineococcus_radiotolerans         ----------------------------------------
B Leifsonia_xyli                    ----------------------------------------
B Mannheimia_succiniciproducens     ----------------------------------------
B Nitrosomonas_europaea             ----------------------------------------
B Nitrosomonas_eutropha             ----------------------------------------
B Oceanobacillus_iheyensis          ----------------------------------------
B Pasteurella_multocida             ----------------------------------------
B Photobacterium_profundum          ----------------------------------------
B Photorhabdus_luminescens          ----------------------------------------
B Proteus_mirabilis                 ----------------------------------------
B Pseudomonas_cepacia               ----------------------------------------
B Pseudomonas_pseudomallei          ----------------------------------------
B Shewanella_amazonensis            ----------------------------------------
B Shewanella_putrefaciens           ----------------------------------------
B Streptomyces_avermitilis          ----------------------------------------
B Vibrio_alginolyticus              ----------------------------------------
B Vibrio_angustum                   ----------------------------------------
B Vibrio_cholerae                   ----------------------------------------
B Vibrio_fischeri                   ----------------------------------------
B Vibrio_parahaemolyticus           ----------------------------------------
B Vibrio_splendidus                 ----------------------------------------
B Vibrio_vulnificus                 ----------------------------------------
B Yersinia_enterocolitica           ----------------------------------------
B Cupriavidus_metallidurans-Q1LR74  ----------------------------------------
B Cupriavidus_metallidurans-RECA    ----------------------------------------
B Erwinia_carotovora-RECA           ----------------------------------------
B Erwinia_carotovora-RECA_ERWCT     ----------------------------------------
B Listeria_monocytogenes-RECA       ----------------------------------------
B Listeria_monocytogenes-RECA_LISMF ----------------------------------------
B Neisseria_gonorrhoeae-RECA        ----------------------------------------
B Neisseria_gonorrhoeae-RECA_VAR    ----------------------------------------
B Salmonella_typhi-RECA             ----------------------------------------
B Salmonella_typhi-RECA_SALPA       ----------------------------------------
B Streptomyces_coelicolor-RECA      ----------------------------------------
B Streptomyces_coelicolor-RECA_STRL ----------------------------------------
B Xylella_fastidiosa-RECA           ----------------------------------------
B Xylella_fastidiosa-RECA_XYLFT     ----------------------------------------
B Yersinia_pestis-RECA              ----------------------------------------
B Yersinia_pestis-RECA_YERPS        ----------------------------------------
B Mycobacterium_tuberculosis-RECA   ----------------------------------------
B Mycobacterium_tuberculosis-RECA_M ----------------------------------------
B Neisseria_meningitidis-RECA       ----------------------------------------
B Neisseria_meningitidis-RECA_NEIMA ----------------------------------------
B Neisseria_meningitidis-RECA_VAR   ----------------------------------------
B Xanthomonas_vasicola-RECA_XANAC   ----------------------------------------
B Xanthomonas_vasicola-RECA_XANCP   ----------------------------------------
B Xanthomonas_vasicola-YP_201580    ----------------------------------------
B Pseudomonas_aeruginosa-Q48F94     ----------------------------------------
B Pseudomonas_aeruginosa-RECA       ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEF5 ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEFL ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPK ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPU ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSESM ----------------------------------------
============================================================================
B DEINOCOCCUS_RADIODURANS           ----------------------------------------
B Deinococcus_geothermalis          ----------------------------------------
B Thermus_aquaticus-RECA            ----------------------------------------
B Thermus_aquaticus-RECA_THET2      ----------------------------------------
B Thermus_aquaticus-RECA_THET8      ----------------------------------------
B Thermus_aquaticus-RECA_THETH      ----------------------------------------
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                                           170       180       190       200
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               ------------------------edlpgvgpataeklre
A Archaeoglobus_fulgidus            ------------------------edipgvgpetarklre
A Pyrococcus_abyssi                 ------------------------edlpgvgpataeklre
============================================================================
A METHANOCOCCUS_VOLTAE              ---------------------------lpgvgpstaeklv
A Methanococcus_jannaschii          ---------------------------lpgvgpttaeklk
A Methanococcus_maripaludis         ---------------------------lpgvgpstadkli
============================================================================
A SULFOLOBUS_SOLFATARICUS           -----------------------tindlpgisqtvinkli
A Desulfurococcus_amylolyticus      -----------------------svrdipgvgssiadkle
A Sulfolobus_acidocaldarius         -----------------------slsdlsgvgqnilnklv
A Sulfolobus_tokodaii               -----------------------slsdlpgvgqsilnkli
A Aeropyrum_pernix-RADA             -----------------------ditdlpgvgpttaqklm
A Aeropyrum_pernix-RADA_VAR_OH1     -----------------------ditdlpgvgpttaqklm
A Aeropyrum_pernix-RADA_VAR_OH2     -----------------------ditdlpgvgpttaqklm
A Aeropyrum_pernix-RADA_VAR_OH3     -----------------------ditdlpgvgpttaqklm
A Aeropyrum_pernix-RADA_VAR_TB1     -----------------------ditdlpgvgpttaqklm
A Aeropyrum_pernix-RADA_VAR_TB2     -----------------------ditdlpgvgpttaqklm
A Aeropyrum_pernix-RADA_VAR_TB6     -----------------------ditdlpgvgpttaqklm
============================================================================
* HUMAN                             -pisrl-e---------------qc----ginandvkkle
* S_CEREVISIAE                      -piekl-q---------------vn----gitmadvkklr
* Apis_mellifera                    -liktl-e---------------gn----gitagdvkkle
* Aspergillus_flavus                -plsal-e------g--------va----gltgrdiklfv
* Aspergillus_fumigatus             -plsal-e------g--------va----gltsrdiklfv
* Bovine                            -pisrl-e---------------qc----ginandvkkle
* C_elegans                         -vidkl-e---------------ss----gissgdisklk
* Candida_albicans                  -lieql-e---------------gn----ginasdikklk
* Candida_glabrata                  -plekl-q---------------vn----gitstdikklr
* Canis_lupus                       -pisrl-e---------------qc----ginandvkkle
* Chaetomium_globosum               -pllal-e------g--------vs----gltkreiqaiv
* Coccidioides_immitis              -plsal-evytfhigirrpisefmcqgvngltardiklli
* Coprinus_cinereus                 -lvnkl-q---------------ea----gihandikkla
* Cricetulus_griseus                -pisrl-e---------------qc----gisandvkkle
* Cryptococcus_neoformans           --vakl-q---------------ea----gisaqdtkkla
* Danio_rerio                       -pvsrl-e---------------qs----gisssdikkle
* Debaryomyces_hansenii             -lieql-e---------------gn----gitsgdirklk
* D_melanogaster                    -svtkl-i---------------gg----sitakdikllq
* D_pseudoobscura                   -nvtkl-i---------------gg----sitakdikllq
* Emericella_nidulans               -plssl-e------g--------ma----gltsrdiklfv
* Encephalitozoon_cuniculi          -sisel-k---------------ng----gilavdiakli
* Eremothecium_gossypii             vplerl-q---------------vn----gitnndlkklr
* Chicken                           -pisrl-e---------------qc----ginandvkkle
* Gibberella_zeae                   -plfal-e------g--------va----gltkrdiqlvv
* Kluyveromyces_lactis              -piekl-q---------------vn----gitsgdikklr
* Mouse                             -pisrl-e---------------qc----ginandvkkle
* Neurospora_crassa                 -plsal-e------g--------va----gltkrdiqliv
* Rabbit                            -pvsrl-e---------------qc----ginandvkkle
* Pichia_angusta                    -piqql-v---------------gn----gitpqdikklk
* Rat                               -pisrl-e---------------qc----ginandvkkle
* Schizosaccharomyces_pombe         -plqml-e---------------gn----gitasdikkih
* Strongylocentrotus_purpuratus     -gisrl-e---------------as----gissndvkkle
* Tetraodon_nigroviridis            -plcrl-e---------------qc----gisasdikkle
* Tribolium_castaneum               -plskl-q---------------vn----gitagdlkkle
* Ustilago_maydis                   -pvskl-e---------------ef----gisssdckkla
* X_tropicalis                      -aisrl-e---------------qc----ginandvkkle
* Yarrowia_lipolytica               -pierl-a---------------vn----gitqtdinrlg
* X_laevis-RA51A                    -aisrl-e---------------qc----ginandvkkle
* X_laevis-RA51B                    -aitrl-e---------------qc----ginandvkkle
  Cryptosporidium_hominis           -klehl-l---------------ps----gltkrdleilr
  Cryptosporidium_parvum            -klehl-l---------------ps----gltkrdleilr
  Dictyostelium_discoideum          lsinkl-e---------------gn----ginaadlkklq
  Entamoeba_histolytica             -pirklig---------------la----gitegdckkle
  Leishmania_donovani               -viqil-e---------------ny----gvassdikklm
  Leishmania_tropica                -viqil-e---------------ny----gvassdikklm
  Plasmodium_berghei                -kieql-l---------------ak----gfvkrdlellk
  Plasmodium_falciparum             -kieql-l---------------ak----gfvkrdlellk
  Tetrahymena_thermophila           -liakl-e---------------eh----ginnadvkkli
  Theileria_annulata                -rlecl-l---------------sk----gllqrdldllr
  Theileria_parva                   -rlecl-l---------------sk----gllqrdldllr
  Trypanosoma_brucei                -vlqim-e---------------ny----gvasadikklm
  Trypanosoma_cruzi                 -viqvl-e---------------sy----giasadikklm
P Arabidopsis_thaliana              -pveql-q---------------aa----giasvdvkklr
P Oryza_sativa                      -pieql-q---------------as----giaaldvkklk
P Maize-R51A1                       -pieql-q---------------as----giaaldvkklk
P Maize-R51A2                       -pieql-q---------------as----giaaldvkklk
============================================================================
B E_COLI                            ----------------------------------------
B MYCOBACTERIUM_SMEGMATIS           ----------------------------------------
B MYCOBACTERIUM_TUBERCULOSIS        ----------------------------------------
B Acinetobacter_calcoaceticus       ----------------------------------------
B Actinobacillus_pleuropneumoniae   ----------------------------------------
B Actinobacillus_succinogenes       ----------------------------------------
B Actinomyces_bovis                 ----------------------------------------
B Azotobacter_vinelandii            ----------------------------------------
B Bacillus_clausii                  ----------------------------------------
B Bacillus_halodurans               ----------------------------------------
B Bacillus_licheniformis            ----------------------------------------
B Bacillus_megaterium               ----------------------------------------
B Bacillus_subtilis                 ----------------------------------------
B Bordetella_pertussis              ----------------------------------------
B Burkholderia_fungorum             ----------------------------------------
B Chromobacterium_violaceum         ----------------------------------------
B Clostridium_acetobutylicum        ----------------------------------------
B Clostridium_thermocellum          ----------------------------------------
B Colwellia_psychrerythraea         ----------------------------------------
B Corynebacterium_efficiens         ----------------------------------------
B Desulfotalea_psychrophila         ----------------------------------------
B Enterococcus_faecalis             ----------------------------------------
B Haemophilus_ducreyi               ----------------------------------------
B Haemophilus_influenzae            ----------------------------------------
B Histophilus_somni                 ----------------------------------------
B Kineococcus_radiotolerans         ----------------------------------------
B Leifsonia_xyli                    ----------------------------------------
B Mannheimia_succiniciproducens     ----------------------------------------
B Nitrosomonas_europaea             ----------------------------------------
B Nitrosomonas_eutropha             ----------------------------------------
B Oceanobacillus_iheyensis          ----------------------------------------
B Pasteurella_multocida             ----------------------------------------
B Photobacterium_profundum          ----------------------------------------
B Photorhabdus_luminescens          ----------------------------------------
B Proteus_mirabilis                 ----------------------------------------
B Pseudomonas_cepacia               ----------------------------------------
B Pseudomonas_pseudomallei          ----------------------------------------
B Shewanella_amazonensis            ----------------------------------------
B Shewanella_putrefaciens           ----------------------------------------
B Streptomyces_avermitilis          ----------------------------------------
B Vibrio_alginolyticus              ----------------------------------------
B Vibrio_angustum                   ----------------------------------------
B Vibrio_cholerae                   ----------------------------------------
B Vibrio_fischeri                   ----------------------------------------
B Vibrio_parahaemolyticus           ----------------------------------------
B Vibrio_splendidus                 ----------------------------------------
B Vibrio_vulnificus                 ----------------------------------------
B Yersinia_enterocolitica           ----------------------------------------
B Cupriavidus_metallidurans-Q1LR74  ----------------------------------------
B Cupriavidus_metallidurans-RECA    ----------------------------------------
B Erwinia_carotovora-RECA           ----------------------------------------
B Erwinia_carotovora-RECA_ERWCT     ----------------------------------------
B Listeria_monocytogenes-RECA       ----------------------------------------
B Listeria_monocytogenes-RECA_LISMF ----------------------------------------
B Neisseria_gonorrhoeae-RECA        ----------------------------------------
B Neisseria_gonorrhoeae-RECA_VAR    ----------------------------------------
B Salmonella_typhi-RECA             ----------------------------------------
B Salmonella_typhi-RECA_SALPA       ----------------------------------------
B Streptomyces_coelicolor-RECA      ----------------------------------------
B Streptomyces_coelicolor-RECA_STRL ----------------------------------------
B Xylella_fastidiosa-RECA           ----------------------------------------
B Xylella_fastidiosa-RECA_XYLFT     ----------------------------------------
B Yersinia_pestis-RECA              ----------------------------------------
B Yersinia_pestis-RECA_YERPS        ----------------------------------------
B Mycobacterium_tuberculosis-RECA   ----------------------------------------
B Mycobacterium_tuberculosis-RECA_M ----------------------------------------
B Neisseria_meningitidis-RECA       ----------------------------------------
B Neisseria_meningitidis-RECA_NEIMA ----------------------------------------
B Neisseria_meningitidis-RECA_VAR   ----------------------------------------
B Xanthomonas_vasicola-RECA_XANAC   ----------------------------------------
B Xanthomonas_vasicola-RECA_XANCP   ----------------------------------------
B Xanthomonas_vasicola-YP_201580    ----------------------------------------
B Pseudomonas_aeruginosa-Q48F94     ----------------------------------------
B Pseudomonas_aeruginosa-RECA       ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEF5 ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEFL ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPK ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPU ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSESM ----------------------------------------
============================================================================
B DEINOCOCCUS_RADIODURANS           ----------------------------------------
B Deinococcus_geothermalis          ----------------------------------------
B Thermus_aquaticus-RECA            ----------------------------------------
B Thermus_aquaticus-RECA_THET2      ----------------------------------------
B Thermus_aquaticus-RECA_THET8      ----------------------------------------
B Thermus_aquaticus-RECA_THETH      ----------------------------------------
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                                           210       220       230       240
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxkxxxxxxaxkivekxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               agydtleaiavaspielkevagisegtalkiIqaarkaan
A Archaeoglobus_fulgidus            agystieavavaspselanvggitegnavkiIqaarklan
A Pyrococcus_abyssi                 agfdtleaiavaspielkevagisegaalkiIqaarkaan
============================================================================
A METHANOCOCCUS_VOLTAE              eagyidfmkiatatvgeltdiEgisekaAaKMImgardlc
A Methanococcus_jannaschii          eagytdfmkiatasigelteidgisekaAaRIIEaarelc
A Methanococcus_maripaludis         eggyldfmkiatatigeltdiEgisekaAaKMImaardlc
============================================================================
A SULFOLOBUS_SOLFATARICUS           eagyssletlavaspqdlsvaagiplstAqKIIKEardal
A Desulfurococcus_amylolyticus      aagylsawsivvaraeelaertglpvltvqKIIEnarkml
A Sulfolobus_acidocaldarius         eagyssleavavatpqdlsvaagipqttAqRIIKEareal
A Sulfolobus_tokodaii               eagyssleavavaspqdlsvaagiplttAqRIIKEareal
A Aeropyrum_pernix-RADA             eagyttleaiaaatpqevsqatgipiltAqKIVDaareal
A Aeropyrum_pernix-RADA_VAR_OH1     eagyttleaiaaatpqevsqatgipiltAqKIVDaareal
A Aeropyrum_pernix-RADA_VAR_OH2     eagyttleaiaaatpqevsqatgipiltAqKIVDaareal
A Aeropyrum_pernix-RADA_VAR_OH3     eagyttleaiaaatpqevsqatgipiltAqKtVDaareal
A Aeropyrum_pernix-RADA_VAR_TB1     eagyttleaiaaatpqevsqatgipiltAqKIVDaareal
A Aeropyrum_pernix-RADA_VAR_TB2     eagyttleaiaaatpqevsqatgipiltAqKIVDaareal
A Aeropyrum_pernix-RADA_VAR_TB6     eagyttleaiaaatpqevsqatgipiltAqKIVDaareal
============================================================================
* HUMAN                             eagfhtveavayapkkeliniKgiseakAdKILaEaaklv
* S_CEREVISIAE                      esglhtaeavayaprkdlleiKgiseakAdKLLnEaarlv
* Apis_mellifera                    eagyytveavayapkkcliaiKgiseakAdKILQEasklv
* Aspergillus_flavus                dagyhtvesiaytpkrlleqiKgiseqkAtKVLvEaaklv
* Aspergillus_fumigatus             dagyhtvesiaytpkrlleqiKgiseqkAtKILvEaaklv
* Bovine                            eagfhtveavayapkkeliniKgiseakAdKILtEaaklv
* C_elegans                         eagyytyeslafttrrelrnvKgisdqkAeKIMKEamkfv
* Candida_albicans                  aegfhtiesiaytpkrhlmtvKgisenkAeKIsaEaaklv
* Candida_glabrata                  esglhtveavayapkkdlleiKgisetkAdRLLnEaarlv
* Canis_lupus                       eagfhtveavayapkkelisiKgiseakAdKILtEaaklv
* Chaetomium_globosum               esglntveavaytpqrvleqvKgissqkAaKILaEasklv
* Coccidioides_immitis              dggyhtveavaytpkrmleqiKgiseqkAaKILaEatkiv
* Coprinus_cinereus                 daglntveavaftpkknllaiRgiseqkAdKILaEaqkiv
* Cricetulus_griseus                eagfhtveavayapkkeliniKgiseakAdKILaEaaklv
* Cryptococcus_neoformans           dagfhtveavaftpkktlctiKgiseqkAdKILaEackmv
* Danio_rerio                       dggfhtveavayapkkellniKgiseakAdKILtEaakmv
* Debaryomyces_hansenii             aegyhtiesiaytpkkalllvKgiseakAdKIslEaakvv
* D_melanogaster                    qaslhtvesvanatkkqlmaipglgggkveQIItEanklv
* D_pseudoobscura                   qaslhtvdavanatrkhllaipglggskvdQIIsEaskmv
* Emericella_nidulans               dagyhtvesiaytpkrlleqiKgiseqkAtKILvEaaklv
* Encephalitozoon_cuniculi          eagfttveslafapkrqllsiKgfsdikvdKLIKEaaklv
* Eremothecium_gossypii             englhtveavayaprkdlleiKgiseakAdKLLaEaarlv
* Chicken                           eagyhtvesvahapkkellniKgiseakAdKILaEaaklv
* Gibberella_zeae                   dggyntvesvaytprrvleqiKgiseqkAtKILaEasklv
* Kluyveromyces_lactis              esglhtaeavayaprkdlmeiKgiseakAdKLLaEasrlv
* Mouse                             eagyhtveavayapkkeliniKgiseakAdKILtEaaklv
* Neurospora_crassa                 dggfntvesvaytprrvleqiKgiseqkAgKILaEasklv
* Rabbit                            eagfhteeavayapkkeliniKgiseakAdKILtEaaklv
* Pichia_angusta                    eagfhtvesiaytpkrhivtvKgiseqkAdKLLmEasklv
* Rat                               eagyhtveavayapkkeliniKgiseakAdKILaEaaklv
* Schizosaccharomyces_pombe         eagyytvesiaytpkrqllliKgiseakAdKLLgEasklv
* Strongylocentrotus_purpuratus     eagmhtvesvaystkkelcavKgiseakAdKILtEaqklv
* Tetraodon_nigroviridis            dagfhtieavayapkkellniKgiseakAdKILtEaaklv
* Tribolium_castaneum               dagfhsiesiaytpkkvlgaiKgiseakvdKLLaEaakfv
* Ustilago_maydis                   esgyntvesiaftpkkqlllvKgvseakAdKILaEaarlv
* X_tropicalis                      eagfhtveavayapkkeliniKgiseakAeKILaEaaklv
* Yarrowia_lipolytica               efglytvesvaytpkkhlltiKgiseakAdKLLsEasklv
* X_laevis-RA51A                    eagfhtveavayapkkellniKgiseakAeKILaEaaklv
* X_laevis-RA51B                    dagfhtveavayapkkellniKgiseakAeKILaEaaklv
  Cryptosporidium_hominis           engyhtieclayapkkallsvKgiseqkcdKIksackelv
  Cryptosporidium_parvum            engyhtieclayapkkallsvKgiseqkcdKIksackelv
  Dictyostelium_discoideum          eqglntvqavafttkktltgiKgiseqkAdKLLaEakklv
  Entamoeba_histolytica             eagfftvqsiaftpkkqlitiKgisdakAdKLLaEsskiv
  Leishmania_donovani               ecgfytvesaayapkkailavKgisenkAeKIMaEcaklv
  Leishmania_tropica                ecgfytvesaayapkkailavKgisenkAeKIMaEcaklv
  Plasmodium_berghei                egglqtvecvayapmrtlcsiKgiseqkAeKLkKackelc
  Plasmodium_falciparum             egglqtvecvayapmrtlcaiKgiseqkAeKLkKackelc
  Tetrahymena_thermophila           dagfqtvesisytakknllqiKgmteakidKILDvaaklv
  Theileria_annulata                eagystlecvayapqknllviKglseqkvlKIkaacrelc
  Theileria_parva                   eagystlecvayapqknllviKglseqkvlKIkaacrelc
  Trypanosoma_brucei                ecgfltvesvayapkksilavKgiseakAeKIMaEccklt
  Trypanosoma_cruzi                 esgfytvesvayapkknilavKgisetkAdKIMaEcaklv
P Arabidopsis_thaliana              daglctvegvaytprkdllqiKgisdakvdKIVEaasklv
P Oryza_sativa                      dsglytvesvaytprkdllqiKgiseakvdKIVEaasklv
P Maize-R51A1                       dsglhtveavaytprkdllqiKgiseakAdKIIEaaskiv
P Maize-R51A2                       daglctvesvaysprkdllqiKgiseakvdKIIEaasklv
============================================================================
B E_COLI                            ---------------------KqkalaaAlgqIEKqfgkg
B MYCOBACTERIUM_SMEGMATIS           ---------------------RekalelAmaqIDKnfgkg
B MYCOBACTERIUM_TUBERCULOSIS        ---------------------RekalelAmaqIEKsygkg
B Acinetobacter_calcoaceticus       ---------------------KskalqaAlsqIEKqfgkn
B Actinobacillus_pleuropneumoniae   ---------------------KekalaaAlaqIEKqfgkg
B Actinobacillus_succinogenes       ---------------------KskalaaAlgqIEKqfgkg
B Actinomyces_bovis                 ---------------------RdkalelAlaqVEKsfgkg
B Azotobacter_vinelandii            ---------------------KkralaaAlgqIEKqfgkg
B Bacillus_clausii                  ---------------------RkqaldmAlRhIEKqfgkg
B Bacillus_halodurans               ---------------------RkaaldmAlRqIEKqfgkg
B Bacillus_licheniformis            ---------------------RqaaldmAlKqIEKqfgkg
B Bacillus_megaterium               ---------------------RqaaldmAlKqIEKqfgkg
B Bacillus_subtilis                 ---------------------RqaaldmAlKqIEKqfgkg
B Bordetella_pertussis              ---------------------KakalaaAlsqIEKqfgkg
B Burkholderia_fungorum             ---------------------KskalaaAlaqIEKqfgkg
B Chromobacterium_violaceum         ---------------------KskalaaAlaqIEKqfgkg
B Clostridium_acetobutylicum        ---------------------KlkaidaAmsqIEKqfgkg
B Clostridium_thermocellum          ---------------------KkkalemvlgqIEKqfgkg
B Colwellia_psychrerythraea         ---------------------KekalsaAlaqIERqfgkg
B Corynebacterium_efficiens         ---------------------RqkaldaAlaLIEKdfgkg
B Desulfotalea_psychrophila         ---------------------KagsvenAisqIQKqfgkg
B Enterococcus_faecalis             ---------------------RkvaldaAlKkIEKnfgkg
B Haemophilus_ducreyi               ---------------------KekalaaAlaqIEKqfgkg
B Haemophilus_influenzae            ---------------------KqkalaaAlgqIEKqfgkg
B Histophilus_somni                 ---------------------KakaleaAlgqIEKqfgkg
B Kineococcus_radiotolerans         ---------------------RekaldaAlaaIDKnfgkg
B Leifsonia_xyli                    ---------------------RekalvtAlaqIDRqfgkg
B Mannheimia_succiniciproducens     ---------------------KskalaaAlgqIEKqfgkg
B Nitrosomonas_europaea             ---------------------KnkalsaAlaqIEKqygkg
B Nitrosomonas_eutropha             ---------------------KnkaltaAlaqIEKqygkg
B Oceanobacillus_iheyensis          ---------------------RkqaldmAlRqIEKqfgkg
B Pasteurella_multocida             ---------------------KnkalaaAlgqIEKqfgkg
B Photobacterium_profundum          ---------------------KqkalaaAlgqIEKqfgkg
B Photorhabdus_luminescens          ---------------------KqkalaaAlgqIEKqfgkg
B Proteus_mirabilis                 ---------------------KqkalaaAlgqIEKqfgkg
B Pseudomonas_cepacia               ---------------------KskalaaAlaqIEKqfgkg
B Pseudomonas_pseudomallei          ---------------------KskalaaAlaqIEKqfgkg
B Shewanella_amazonensis            ---------------------KekalaavlgqIEKqfgkg
B Shewanella_putrefaciens           ---------------------KekalaavlsqIEKqfgkg
B Streptomyces_avermitilis          ---------------------RekaldaAlaqIERqfgkg
B Vibrio_alginolyticus              ---------------------KqkalaaAlgqIEKqfgkg
B Vibrio_angustum                   ---------------------KqkalaaAlgqIEKqfgkg
B Vibrio_cholerae                   ---------------------KqkalaaAlgqIEKqfgkg
B Vibrio_fischeri                   ---------------------KkkalaaAlgqIEKqfgkg
B Vibrio_parahaemolyticus           ---------------------KqkalaaAlgqIEKqfgkg
B Vibrio_splendidus                 ---------------------KqkalaaAlgqIEKqfgkg
B Vibrio_vulnificus                 ---------------------KqkalaaAlgqIEKqfgkg
B Yersinia_enterocolitica           ---------------------KqkalaaAlgqIEKqfgkg
B Cupriavidus_metallidurans-Q1LR74  ---------------------KqkalaaAlsqIEKqfgkg
B Cupriavidus_metallidurans-RECA    ---------------------KqkalaaAlsqIEKqfgkg
B Erwinia_carotovora-RECA           ---------------------KqkalaaAlgqIEKqfgkg
B Erwinia_carotovora-RECA_ERWCT     ---------------------KqkalaaAlgqIEKqfgkg
B Listeria_monocytogenes-RECA       ---------------------RqaaldqAlKqIEKqfgkg
B Listeria_monocytogenes-RECA_LISMF ---------------------RqaaldqAlKqIEKqfgkg
B Neisseria_gonorrhoeae-RECA        ---------------------KskalaaAlaqIEKsfgkg
B Neisseria_gonorrhoeae-RECA_VAR    ---------------------KskalaaAlaqIEKsfgkg
B Salmonella_typhi-RECA             ---------------------KqkalaaAlgqIEKqfgkg
B Salmonella_typhi-RECA_SALPA       ---------------------KqkalaaAmgqIEKqfgkg
B Streptomyces_coelicolor-RECA      ---------------------RekaldaAlaqIERqfgkg
B Streptomyces_coelicolor-RECA_STRL ---------------------RekaldaAlaqIERqfgkg
B Xylella_fastidiosa-RECA           ---------------------KkralsvAlsqIEKqfgkg
B Xylella_fastidiosa-RECA_XYLFT     ---------------------KkralsvAlsqIEKqfgkg
B Yersinia_pestis-RECA              ---------------------KqkalaaAlgqIEKqfgkg
B Yersinia_pestis-RECA_YERPS        ---------------------KqkalaaAlgqIEKqfgkg
B Mycobacterium_tuberculosis-RECA   ---------------------RekalelAvaqIEKsygkg
B Mycobacterium_tuberculosis-RECA_M ---------------------RekalelAmaqIEKsygkg
B Neisseria_meningitidis-RECA       ---------------------KskalaaAlaqIEKsfgkg
B Neisseria_meningitidis-RECA_NEIMA ---------------------KskalaaAlaqIEKsfgkg
B Neisseria_meningitidis-RECA_VAR   ---------------------KskalaaAlaqIEKsfgkg
B Xanthomonas_vasicola-RECA_XANAC   ---------------------KkralsaAlsqIEKqfgkg
B Xanthomonas_vasicola-RECA_XANCP   ---------------------KkralsaAlsqIEKqfgkg
B Xanthomonas_vasicola-YP_201580    ---------------------KkralaaAlsqIEKqfgkg
B Pseudomonas_aeruginosa-Q48F94     ---------------------KkkalaaAlgqIERqfgkg
B Pseudomonas_aeruginosa-RECA       ---------------------KkralaaAlgqIERqfgkg
B Pseudomonas_aeruginosa-RECA_PSEF5 ---------------------KkkalaaAlgqIERqfgkg
B Pseudomonas_aeruginosa-RECA_PSEFL ---------------------KkkalaaAlgqIERqfgkg
B Pseudomonas_aeruginosa-RECA_PSEPK ---------------------KkralaaAlgqIERqfgkg
B Pseudomonas_aeruginosa-RECA_PSEPU ---------------------KkralaaAlgqIERqfgkg
B Pseudomonas_aeruginosa-RECA_PSESM ---------------------KkkalaaAlgqIERqfgkg
============================================================================
B DEINOCOCCUS_RADIODURANS           -------------------------rskAiEtamsqieka
B Deinococcus_geothermalis          -------------------------rlkAiEtamtqieka
B Thermus_aquaticus-RECA            -------------------------krkslEnalKtieke
B Thermus_aquaticus-RECA_THET2      -------------------------krkAlEnalKaieke
B Thermus_aquaticus-RECA_THET8      -------------------------krkAlEnalKaieke
B Thermus_aquaticus-RECA_THETH      -------------------------krkAlEnalKaieke
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxkxxxxxxaxkivekxxxxx

                                           250       260       270       280
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xixfmxgxxxxxqqxdIxxIsTGSxxLDxlLxxGGIexGx
============================================================================
A PYROCOCCUS_FURIOSUS               lgtFMradeylkKRatIgrISTGSksLDkLL-gGGIEtqa
A Archaeoglobus_fulgidus            iggFesGdkvleRRrsVkkITTGSkdLDeLL-gGGVEtqa
A Pyrococcus_abyssi                 lgtFMradeylkKResIgrISTGSksLDkLL-gGGIEtqa
============================================================================
A METHANOCOCCUS_VOLTAE              dLgFksGidllkQRstVwkLSTsSseLDsVL-gGGLEsqs
A Methanococcus_jannaschii          nLgFksGtevlsQRkNIwkLSTGSknLDeIL-gGGLEsqs
A Methanococcus_maripaludis         dLgFksGvellkQRqsVwrLSTGSteLDtVL-aGGIEsqs
============================================================================
A SULFOLOBUS_SOLFATARICUS           dIrFktalevkkERmNVkkISTGSqaLDgLL-aGGIEtrt
A Desulfurococcus_amylolyticus      gItFktarevkqERsNIgkITTGSksLDeLL-gGGVEtkt
A Sulfolobus_acidocaldarius         dIrFktalevkkERmNtkkITTGSqaLDgLL-gGGIEtrt
A Sulfolobus_tokodaii               dIrFktalevkkERiNtkkITTGSqaLDgLL-gGGIEtrt
A Aeropyrum_pernix-RADA             nIdFktaydlkiEsmNIkkITTGSrnLDeLL-gGGIEtkt
A Aeropyrum_pernix-RADA_VAR_OH1     nIdFktaydlkiEsmNIkkITTGSrnLDeLL-gGGIEtkt
A Aeropyrum_pernix-RADA_VAR_OH2     nIdFktaydlkiEsmNIkkITTGSrnLDeLL-gGGIEtkt
A Aeropyrum_pernix-RADA_VAR_OH3     nIdFktaydlkiEsmNIkkITTGSrnLDeLL-gGGIEtkt
A Aeropyrum_pernix-RADA_VAR_TB1     nIdFktaydlkiEsmNIkkITTGSrnLDeLL-gGGIEtkt
A Aeropyrum_pernix-RADA_VAR_TB2     nIdFktaydlkiEsmNIkkITTGSrnLDeLL-gGGIEtkt
A Aeropyrum_pernix-RADA_VAR_TB6     nIdFktaydlkiEsmNIkkITTGSrnLDeLL-gGGIEtkt
============================================================================
* HUMAN                             pMgFttatefhqRRsEIiqITTGSkeLDkLL-qGGIEtGs
* S_CEREVISIAE                      pMgFVtaadfhmRRsELicLTTGSknLDtLL-gGGVEtGs
* Apis_mellifera                    vMgFksateihqtRsNIvfVTTGSseLDrLL-gGGIEtGs
* Aspergillus_flavus                pMgFttatemhaRRsELisITTGSkqLDtLL-gGGIEtGs
* Aspergillus_fumigatus             pMgFttatemhaRRsELisITTGSkqLDtLL-gGGIEtGs
* Bovine                            pMgFttatefhqRRsEIiqITTGSkeLDkLL-qGGIEtGs
* C_elegans                         qMgFttGaevhvKRsqLvqIrTGSasLDrLL-gGGIEtGs
* Candida_albicans                  pLgFttasefhsRRsELicLTTGSkqLDtLL-gGGVEtGs
* Candida_glabrata                  pMgFVtaadfhmRRsEMicLTTGSknLDtLL-gGGIEtGs
* Canis_lupus                       pMgFttatefhqRRsEIiqITTGSkeLDkLL-qGGIEtGs
* Chaetomium_globosum               pMgFttatemhqRRsELisITTGSkqLDtLL-aGGIEtGs
* Coccidioides_immitis              pMgFttatemhaRRaDLicITTGSrqLDtLL-aGGVEtGs
* Coprinus_cinereus                 pLgFqsatevhaRRsELvhITTGSkqLDaLL-gGGIEtGa
* Cricetulus_griseus                pMgFttatefhqRRsEIiqITTGSkeLDkLL-qGGIEtGs
* Cryptococcus_neoformans           pMgFttateihsRRsELvhITTGStgLDtIL-gGGIEtGa
* Danio_rerio                       pMgFttatefhqRRaEIiqISTGSkeLDkLL-qGGIEtGs
* Debaryomyces_hansenii             pLgFttasefhsRRsELicITTGSkqLDtLL-gGGIEtGs
* D_melanogaster                    pLgFLsartfyqmRaDVvqLSTGSkeLDkLL-gGGIEtGs
* D_pseudoobscura                   pLgFLsartfhqmRaDVvmLTTGSkeLDkLL-gGGIEtGs
* Emericella_nidulans               pMgFttatemhaRRsELisITTGSkqLDtLL-gGGIEtGs
* Encephalitozoon_cuniculi          pMgFttasayhqRRsELvyLTTGSseVDkLL-sGGfEsGs
* Eremothecium_gossypii             pMgFVtaadfhlRRaEMicLTTGSknLDtLL-gGGIEtGs
* Chicken                           pMgFttatefhqRRsEIiqITTGSkeLDkLL-qGGIEtGs
* Gibberella_zeae                   pMgFttatemhqRRsELisITTGSknLDtLL-aGGIEtGs
* Kluyveromyces_lactis              pMgFVtaadfhlRRnEMicLTTGSknLDtLL-gGGIEtGs
* Mouse                             pMgFttatefhqRRsEIiqITTGSkeLDkLL-qGGIEtGs
* Neurospora_crassa                 pMgFttatemhqRRsELisITTGSknLDtLL-aGGIEtGs
* Rabbit                            pMgFttatefhqRRsEIiqITTGSkeLDkLL-qGGIEtGs
* Pichia_angusta                    pLgFttatefhqRRsELicLTTGSkqLDtLL-gGGIEtGa
* Rat                               pMgFttatefhqRRsEIiqITTGSkeLDkLL-qGGIEtGs
* Schizosaccharomyces_pombe         pMgFttateyhiRRsELitITTGSkqLDtLL-qGGVEtGs
* Strongylocentrotus_purpuratus     pMgFttatqfhqQRsEIiqVTTGSkeLDkLL-qGGIEtGs
* Tetraodon_nigroviridis            pMgFttatefhqRRaEIiqISTGSkeLDkLL-qGGIEtGs
* Tribolium_castaneum               nMgFttatdihrRRaNIiqLTTGSkeLDkLL-gGGIEtGs
* Ustilago_maydis                   pMgFttatefhaRRnELisITTGSknLDaIL-gGGMEtGs
* X_tropicalis                      pMgFttatefhqRRsEIiqISTGSkeLDkLL-qGGIEtGs
* Yarrowia_lipolytica               pLgFttasdvhqtRsgLitLTTGSsqLDtLL-gGGIEtGa
* X_laevis-RA51A                    pMgFttatefhqRRsEIiqISTGSkeLDkLL-qGGVEtGs
* X_laevis-RA51B                    pMgFttatefhqRRsEIiqIgTGSkeLDkLL-qGGIEtGs
  Cryptosporidium_hominis           aMgFcsGteyleaRtNLikfTTGSsqLDrLL-qGGIEtGs
  Cryptosporidium_parvum            aMgFcsGteyleaRtNLikfTTGSsqLDrLL-qGGIEtGs
  Dictyostelium_discoideum          fMgFrtatdinkaRaEIiqITTGSkefDsLL-dGGIEsGs
  Entamoeba_histolytica             pLaFtnaaelnnlRkEtirITTGSreLDkLL-cGGfEtGs
  Leishmania_donovani               pMgFtsavayheaRkEIimVTTGSreVDkLL-gGGIEtGs
  Leishmania_tropica                pMgFtsavayheaRkEIimVTTGSreVDkLL-gGGIEtGs
  Plasmodium_berghei                nsgFcnaidyhdaRqNLikfTTGSkqLDaLL-kGGIEtGg
  Plasmodium_falciparum             nsgFcnaidyhdaRqNLikfTTGSkqLDaLL-kGGIEtGg
  Tetrahymena_thermophila           pndFqtaaeyyvKRqsVinLTTGSteLDkLL-gGGfEtGs
  Theileria_annulata                hLgFcsGqdyleaRgNLikfTTGSsqLDkLL-qGGVEtGs
  Theileria_parva                   hLgFcsGqdyleaRgNLikfTTGSaqLDkLL-qGGVEtGs
  Trypanosoma_brucei                pMgFtratvfqeQRkEtimVTTGSreVDkLL-gGGIEvGs
  Trypanosoma_cruzi                 pMgFtsavvyheaRkEIimVTTGSreVDkLL-gGGIEtGg
P Arabidopsis_thaliana              pLgFtsasqlhaQRqEIiqITSGSreLDkVL-eGGIEtGs
P Oryza_sativa                      pLgFtsasqlhaQRlEIiqVTTGSreLDkIL-dGGIEtGs
P Maize-R51A1                       pLgFtsasqlhaQRlEIiqVTTGSreLDkIL-eGGIEtGs
P Maize-R51A2                       pLgFtsasqlhaQRlEIiqLTTGSreLDqIL-dGGIEtGs
============================================================================
B E_COLI                            sImrL-Ge-dr-sm-DVetISTGSlsLDiaLgaGGLpmGr
B MYCOBACTERIUM_SMEGMATIS           sVmrL-Ge-ev-RQ-pIsvIpTGSisLDvaLgiGGLprGr
B MYCOBACTERIUM_TUBERCULOSIS        sVmrL-Gd-em-RQ-pIsvIpTGSiaLDvaLgiGGLprGr
B Acinetobacter_calcoaceticus       tVmrL-Gd-nt-vQ-aVeaVSTGSltLDiaLgiGGLpkGr
B Actinobacillus_pleuropneumoniae   sImrL-Gd-tq-al-DIeaVSTGSigLDaaLgiGGLpmGr
B Actinobacillus_succinogenes       aImkL-Gd-rp-dm-DVesVSTGSigLDvaLgiGGLpmGr
B Actinomyces_bovis                 aVmrL-Ge-ea-RQ-pIsvIpTGSiaLDvaLgiGGLprGr
B Azotobacter_vinelandii            aVmrM-Gd-he-RQ-aIpaISTGSlgLDiaLgiGGLpkGr
B Bacillus_clausii                  sImkL-Ge-qa-EQ-rVstVSSGTlaLDiaLgvGGypkGr
B Bacillus_halodurans               sImkL-Ge-qa-EQ-rVstISSGalaLDiaLgvGGyprGr
B Bacillus_licheniformis            sImkL-Ge-qt-Et-rIstVpSGSlaLDaaLgvGGyprGr
B Bacillus_megaterium               sImkL-Ge-qt-EK-rIstIpSGSlaLDiaLgvGGyprGr
B Bacillus_subtilis                 sImkL-Ge-kt-dt-rIstVpSGSlaLDtaLgiGGyprGr
B Bordetella_pertussis              sImry-Gd-nevEh-DIqvVSTGSlgLDiaLgvGGLprGr
B Burkholderia_fungorum             sVmrL-Ga-ge-vieDIqvVSTGSlgLDiaLgvGGLprGr
B Chromobacterium_violaceum         sImrM-sdnqi-tE-NLqvISTGSltLDlaLgvGGLprGr
B Clostridium_acetobutylicum        aImkL-Ge-qd-il-NIdaISTGclsLDiaLgiGGVprGr
B Clostridium_thermocellum          aVmkL-Ge-nt-hm-NIetIpTGalgLDiaLgvGGVprGr
B Colwellia_psychrerythraea         sImkL-Gd-nt-tm-DVetISTGSlgLDiaLgaGGLpmGr
B Corynebacterium_efficiens         aVmrL-Gd-en-Rp-pIqvISSGNtaLDiaLgiGGfprGr
B Desulfotalea_psychrophila         sImrL-Ge-qa-lE-aIpvISTGalsLDiaLgvGGLpkGr
B Enterococcus_faecalis             sImkL-Ge-ka-dQ-kIstIpSGSlaLDvaLgvGGyprGr
B Haemophilus_ducreyi               sImrL-Gd-tq-al-DIeaVSTGSigLDaaLgiGGLpmGr
B Haemophilus_influenzae            sImkL-Gd-tk-tl-DVesISTGSlgLDvaLgiGGLpmGr
B Histophilus_somni                 aImkL-Ge-tq-Kl-DIeaISTGSlsLDvaLgiGGLpmGr
B Kineococcus_radiotolerans         sVmrL-Gd-ev-Rp-pIevIpTGSisLDvaLgiGGLprGr
B Leifsonia_xyli                    sVmrL-Gs-de-Ra-pVevVpTGSiaLDvaLgiGGLprGr
B Mannheimia_succiniciproducens     aImkL-Gd-tq-al-DVesISTGSigLDvaLgiGGLpmGr
B Nitrosomonas_europaea             sImrL-Gdsdv-aK-DIqvVSTGSlgLDiaLgvGGLprGr
B Nitrosomonas_eutropha             sImrL-Gdsdv-aK-DIqvVSTGSlsLDiaLgvGGLprGr
B Oceanobacillus_iheyensis          sImkM-Ge-ne-ip-kIatIpSGSlaLDvaLgiGGyprGr
B Pasteurella_multocida             sImkL-Gd-tq-al-DVeaVSTGSlsLDvaLgiGGLpmGr
B Photobacterium_profundum          sImkL-Gd-nr-tm-DIetISTGSlsLDiaLgaGGLpmGr
B Photorhabdus_luminescens          sImrL-Ge-dr-sm-DVetISTGSlsLDiaLgaGGLpmGr
B Proteus_mirabilis                 sImrL-Ge-dr-sm-NVetISTGSlsLDvaLgaGGLprGr
B Pseudomonas_cepacia               sImrM-Gdgea-aE-DIqvVSTGSlgLDiaLgvGGLprGr
B Pseudomonas_pseudomallei          sImrL-Gd-ge-aveDIqvVSTGSlgLDiaLgvGGLprGr
B Shewanella_amazonensis            sImkL-Ge-dr-sm-DVetISTGSlsLDvaLgaGGLpmGr
B Shewanella_putrefaciens           sImkL-Ge-dr-sm-DVetISTGSlsLDvaLgaGGLpmGr
B Streptomyces_avermitilis          aVmrL-Ge-rp-nE-pIevIpTGStaLDvaLgvGGLprGr
B Vibrio_alginolyticus              sImrL-Gd-nr-am-DVetISTGSlsLDiaLgaGGLpmGr
B Vibrio_angustum                   sImkL-Gd-nr-tm-DIetISTGSlsLDiaLgaGGLpmGr
B Vibrio_cholerae                   sImrL-Gd-nr-am-DVetISTGSlsLDiaLgaGGLpmGr
B Vibrio_fischeri                   sImkL-Gd-nr-tm-DVetVSTGSlsLDiaLgaGGLpmGr
B Vibrio_parahaemolyticus           sImrL-Gd-nr-am-DVetISTGSlsLDiaLgaGGLpmGr
B Vibrio_splendidus                 sImrL-Gd-nr-tm-DVetISTGSlsLDiaLgaGGLpmGr
B Vibrio_vulnificus                 sImrL-Gd-nr-am-DVetISTGSlsLDiaLgaGGLpmGr
B Yersinia_enterocolitica           sImrL-Ge-dr-sm-DVetISTGSlsLDiaLgaGGLpmGr
B Cupriavidus_metallidurans-Q1LR74  sImrL-Gd-geiEQ-DIqvVSTGSlgLDiaLgvGGLprGr
B Cupriavidus_metallidurans-RECA    sImrL-Gd-geiEQ-DIqvVSTGSlgLDiaLgvGGLprGr
B Erwinia_carotovora-RECA           sImrL-Ge-dr-sm-NVetISTGSlsLDvaLgaGGLprGr
B Erwinia_carotovora-RECA_ERWCT     sImrL-Ge-dr-sm-DVetISTGSlsLDiaLgaGGLpmGr
B Listeria_monocytogenes-RECA       sImkL-Ge-hs-dQ-NIstISSGSlaLDiaLgvGGyprGr
B Listeria_monocytogenes-RECA_LISMF sImkL-Ge-hs-dQ-NIstISSGSlaLDiaLgvGGyprGr
B Neisseria_gonorrhoeae-RECA        aImkMdGs-qq-EE-NLevISTGSlgLDlaLgvGGLprGr
B Neisseria_gonorrhoeae-RECA_VAR    aImkMdGs-qq-EE-NLevISTGSlgLDlaLgvGGLrrGr
B Salmonella_typhi-RECA             sImrL-Ge-dr-sm-DVetISTGSlsLDiaLgaGGLpmGr
B Salmonella_typhi-RECA_SALPA       sImrL-Ge-dr-sm-DVetISTGSlsLDiaLgaGGLpmGr
B Streptomyces_coelicolor-RECA      aVmrM-Gd-rt-nE-pIevIpTGStaLDvaLgvGGIprGr
B Streptomyces_coelicolor-RECA_STRL aVmrM-Gd-rt-nE-pIevIpTGStaLDvaLgvGGIprGr
B Xylella_fastidiosa-RECA           sVmrM-Gd-rv-iE-aVeaIpTGSlmLDlaLgiGGLpkGr
B Xylella_fastidiosa-RECA_XYLFT     sVmrM-Gd-rv-iE-aVeaIpTGSlmLDlaLgiGGLpkGr
B Yersinia_pestis-RECA              sImrL-Ge-dr-sm-DVetISTGSlsLDiaLgaGGLpmGr
B Yersinia_pestis-RECA_YERPS        sImrL-Ge-dr-sm-DVetISTGSlsLDiaLgaGGLpmGr
B Mycobacterium_tuberculosis-RECA   sVmrL-Gd-ea-RQ-pIsvIpTGSiaLDvaLgiGGLprGr
B Mycobacterium_tuberculosis-RECA_M sVmrL-Gd-em-RQ-pIsvIpTGSiaLDvaLgiGGLprGr
B Neisseria_meningitidis-RECA       aImkMdGs-qq-EE-NLevISTGSlgLDlaLgvGGLprGr
B Neisseria_meningitidis-RECA_NEIMA aImkMdGs-qq-EE-NLevISTGSlgLDlaLgvGGLprGr
B Neisseria_meningitidis-RECA_VAR   aImkMdGs-qq-EE-NLevISTGSlgLDlaLgvGGLprGr
B Xanthomonas_vasicola-RECA_XANAC   sVmrM-Gd-rv-iE-aVevIpTGSlmLDiaLgiGGLpkGr
B Xanthomonas_vasicola-RECA_XANCP   sVmrM-Gd-rv-iE-aVevIpTGSlmLDiaLgiGGLpkGr
B Xanthomonas_vasicola-YP_201580    sVmrM-Gd-rv-iE-aVevIpTGSlmLDiaLgtGGLpkGr
B Pseudomonas_aeruginosa-Q48F94     aVmrM-Gd-hd-RQ-aIpaISTGSlgLDiaLgiGGLpkGr
B Pseudomonas_aeruginosa-RECA       aVmrM-Gd-he-RQ-aIpaISTGSlgLDiaLgiGGLpkGr
B Pseudomonas_aeruginosa-RECA_PSEF5 aVmrM-Gd-hd-RQ-aIpaISTGSlgLDiaLgiGGLpkGr
B Pseudomonas_aeruginosa-RECA_PSEFL aVmrM-Gd-hd-RQ-aIpaISTGSlgLDiaLgiGGLpkGr
B Pseudomonas_aeruginosa-RECA_PSEPK aVmrM-Gd-he-RQ-gIpaISTGSlgLDiaLgiGGLpkGr
B Pseudomonas_aeruginosa-RECA_PSEPU aVmrM-Gd-he-RQ-aIpaISTGSlgLDiaLgiGGLpkGr
B Pseudomonas_aeruginosa-RECA_PSESM aVmrM-Gd-hd-RQ-aIpaISTGSlgLDiaLgiGGLpkGr
============================================================================
B DEINOCOCCUS_RADIODURANS           fgkgsimklgaesKlDVqvVSTGSlsLDlaLgvGGIprGr
B Deinococcus_geothermalis          fgkgsimrlgaesKlDVqaVSTGSlsLDlaLgvGGIprGr
B Thermus_aquaticus-RECA            fgkgavmrlgempKlqVdvIpTGSlgLDlaLgiGGIprGr
B Thermus_aquaticus-RECA_THET2      fgkgavmrlgempKqqVdvIpTGSlaLDlaLgiGGIprGr
B Thermus_aquaticus-RECA_THET8      fgkgavmrlgempKqqVdvIpTGSlaLDlaLgiGGIprGr
B Thermus_aquaticus-RECA_THETH      fgkgavmrlgempKqqVdvIpTGSlaLDlaLgiGGIprGr
============================================================================
  Consensus                         xixfmxgxxxxxqqxdIxxIsTGSxxLDxlLxxGGIexGx

                                           290       300       310       320
                                    ----:----|----:----|----:----|----:----|
  Consensus                         ItELFxxxxxxxxxxxxxxxxxGxfxSGKTqIxhslxvsx
============================================================================
A PYROCOCCUS_FURIOSUS               ITEVF-----------------GeFgSGKTQLaHTLaVmv
A Archaeoglobus_fulgidus            ITEfF-----------------GeFgSGKTQIcHqLaVNv
A Pyrococcus_abyssi                 ITEVF-----------------GeFgSGKTQLaHTLaVmv
============================================================================
A METHANOCOCCUS_VOLTAE              VTEfa-----------------GvFgSGKTQImHqscVNl
A Methanococcus_jannaschii          VTEfa-----------------GmFgSGKTQIaHqacVNl
A Methanococcus_maripaludis         VTEfa-----------------GmFgSGKTQImHqtcVNl
============================================================================
A SULFOLOBUS_SOLFATARICUS           MTEfF-----------------GeFgSGKTQLcHqLsVNv
A Desulfurococcus_amylolyticus      ITEfF-----------------GeYgSGKTQIcHqLsVNv
A Sulfolobus_acidocaldarius         MTEfF-----------------GeFgSGKTQLcHqIsISv
A Sulfolobus_tokodaii               MTELF-----------------GeFgSGKTQLcHqLsVNv
A Aeropyrum_pernix-RADA             ITELF-----------------GeFgSGKTQIcHqLsVNv
A Aeropyrum_pernix-RADA_VAR_OH1     ITELF-----------------GeFgSGKTQIcHqLsVNv
A Aeropyrum_pernix-RADA_VAR_OH2     ITELF-----------------GeFgSGKTQIcHqLsVNv
A Aeropyrum_pernix-RADA_VAR_OH3     ITELF-----------------GeFgSGKTQIcHqLsVNv
A Aeropyrum_pernix-RADA_VAR_TB1     ITELF-----------------GeFgSGKTQIcHqLsVNv
A Aeropyrum_pernix-RADA_VAR_TB2     ITELF-----------------GeFgSGKTQIcHqLsVNv
A Aeropyrum_pernix-RADA_VAR_TB6     ITELF-----------------GeFgSGKTQIcHqLsVNv
============================================================================
* HUMAN                             ITEMF-----------------GeFrTGKTQIcHTLaVTc
* S_CEREVISIAE                      ITELF-----------------GeFrTGKSQLcHTLaVTc
* Apis_mellifera                    ITEIF-----------------GeFrSGKTQLcHTLaVNc
* Aspergillus_flavus                ITEIF-----------------GeFrTGKSQIcHTLaVTc
* Aspergillus_fumigatus             ITEIF-----------------GeFrTGKSQIcHTLaVTc
* Bovine                            ITEMF-----------------GeFrTGKTQIcHTLaVTc
* C_elegans                         ITEVY-----------------GeYrTGKTQLcHSLaVlc
* Candida_albicans                  ITEVF-----------------GeFrTGKSQLcHTLaVTc
* Candida_glabrata                  ITELF-----------------GeFrTGKSQLcHSLaVTc
* Canis_lupus                       ITEMF-----------------GeFrTGKTQIcHTLaVTc
* Chaetomium_globosum               VTELF-----------------GeFrTGKSQIcHTLaVTc
* Coccidioides_immitis              ITEIF-----------------GeFrTGKSQIcHTLaVTc
* Coprinus_cinereus                 ITELF-----------------GeFrTGKSQIcHTLaVTc
* Cricetulus_griseus                ITEMF-----------------GeFrTGKTQIcHTLaVTc
* Cryptococcus_neoformans           ITELYgkslrslvaspiantstGeFrTGKSQLcHTLaVTc
* Danio_rerio                       ITEMF-----------------GeFrTGKTQLcHTLaVTc
* Debaryomyces_hansenii             ITEVF-----------------GeFrTGKSQLcHTLaVTc
* D_melanogaster                    ITEIF-----------------GeFrcGKTQLcHTLaVTc
* D_pseudoobscura                   ITEIF-----------------GeFrcGKTQIcHTLaVTc
* Emericella_nidulans               ITEIF-----------------GeFrTGKSQIcHTLaVTc
* Encephalitozoon_cuniculi          ITEIF-----------------GeFrTGKTQLcHTVaVTc
* Eremothecium_gossypii             ITELF-----------------GeFrTGKSQLcHTLaVTc
* Chicken                           ITELF-----------------GeFrTGKTQLcHTLaVTc
* Gibberella_zeae                   VTELF-----------------GeFrTGKSQIcHTLaVTc
* Kluyveromyces_lactis              ITELF-----------------GeFrTGKSQLcHTLaVTc
* Mouse                             ITEMF-----------------GeFrTGKTQIcHTLaVTc
* Neurospora_crassa                 VTEIF-----------------GeFrTGKSQIcHTLaVTc
* Rabbit                            ITEMF-----------------GeFrTGKTQIcHTLaVTc
* Pichia_angusta                    ITEVF-----------------GeFrTGKSQLcHTLaVTc
* Rat                               ITEMF-----------------GeFrTGKTQIcHTLaVTc
* Schizosaccharomyces_pombe         ITELF-----------------GeFrTGKSQIcHTLaVTc
* Strongylocentrotus_purpuratus     ITEIF-----------------GeFrTGKTQLcHTMaVTc
* Tetraodon_nigroviridis            ITEMF-----------------GeFrTGKTQLcHTLaVTc
* Tribolium_castaneum               ITEIF-----------------GeFrTGKTQIcHTLaVTc
* Ustilago_maydis                   ITELY-----------------GeFrTGKSQLcHTLaVTc
* X_tropicalis                      ITEMF-----------------GeFrTGKTQLcHTLaVTc
* Yarrowia_lipolytica               ITEMF-----------------GeFrTGKSQLcHTLaVTc
* X_laevis-RA51A                    ITEMF-----------------GeFrTGKTQLcHTLaVTc
* X_laevis-RA51B                    ITEMF-----------------GeFrTGKTQLcHTLaVTc
  Cryptosporidium_hominis           ITEIF-----------------GeFrTGKTQLcHTLaVTc
  Cryptosporidium_parvum            ITEIF-----------------GeFrTGKTQLcHTLaVTc
  Dictyostelium_discoideum          ITEIF-----------------GeFrTGKTQIcHTLcVTc
  Entamoeba_histolytica             ITELF-----------------GeFrTGKTQLcHqLcVTc
  Leishmania_donovani               ITELF-----------------GeFrTGKTQLcHTLcVTc
  Leishmania_tropica                ITELF-----------------GeFrTGKTQLcHTLcVTc
  Plasmodium_berghei                ITELF-----------------GeFrTGKSQLcHTLaITc
  Plasmodium_falciparum             ITELF-----------------GeFrTGKSQLcHTLaITc
  Tetrahymena_thermophila           LTEIF-----------------GeFrTGKTQIcHTLcITc
  Theileria_annulata                ITEIi-----------------GeFkTGKSQLcHTLaVTc
  Theileria_parva                   ITEIi-----------------GeFkTGKSQLcHTLaVTc
  Trypanosoma_brucei                ITELF-----------------GeFrTGKTQLcHTLcVTc
  Trypanosoma_cruzi                 ITELF-----------------GeFrTGKTQLcHTLcVTc
P Arabidopsis_thaliana              ITELY-----------------GeFrSGKTQLcHTLcVTc
P Oryza_sativa                      ITEIY-----------------GeFrSGKTQLcHTLcVTc
P Maize-R51A1                       ITEIY-----------------GeFrSGKTQLcHTpcVTc
P Maize-R51A2                       ITEMY-----------------GeFrSGKTQLcHTLcVTc
============================================================================
B E_COLI                            IvEIY-----------------GpesSGKTtLtlqViaaa
B MYCOBACTERIUM_SMEGMATIS           ViEIY-----------------GpesSGKTtValhavaNa
B MYCOBACTERIUM_TUBERCULOSIS        VvEIY-----------------GpesSGKTtValhavaNa
B Acinetobacter_calcoaceticus       IvEIY-----------------GpesSGKTtMtlqaiaqc
B Actinobacillus_pleuropneumoniae   IvEIY-----------------GpesSGKTtLtlSViaqa
B Actinobacillus_succinogenes       IvEIF-----------------GpesSGKTtLtlSViaqa
B Actinomyces_bovis                 IvEIY-----------------GpesSGKTtValhavaNa
B Azotobacter_vinelandii            IvEIY-----------------GpesSGKTtLtlStiaea
B Bacillus_clausii                  ViEVY-----------------GpesSGKTtValhaiaev
B Bacillus_halodurans               ViEVY-----------------GpesSGKTtValhaiaev
B Bacillus_licheniformis            IiEVY-----------------GpesSGKTtValhaiaev
B Bacillus_megaterium               VvEVY-----------------GpesSGKTtValhaiaev
B Bacillus_subtilis                 IiEVY-----------------GpesSGKTtValhaiaev
B Bordetella_pertussis              ViEVY-----------------GpesSGKTtLtlqViaem
B Burkholderia_fungorum             VvEIY-----------------GpesSGKTtLtlqViaem
B Chromobacterium_violaceum         VvEIY-----------------GpesSGKTtLclqavaea
B Clostridium_acetobutylicum        VvEIY-----------------GpesSGKTtValhIlaea
B Clostridium_thermocellum          IvEIF-----------------GpesSGKTtValhIiaea
B Colwellia_psychrerythraea         VvEIY-----------------GpesSGKTtLtleViaea
B Corynebacterium_efficiens         IvEVY-----------------GpesSGKTtValhaiaqa
B Desulfotalea_psychrophila         MTEIY-----------------GpesSGKTtLalhVvaea
B Enterococcus_faecalis             IiEVY-----------------GpesSGKTtVslhaiaev
B Haemophilus_ducreyi               IvEIY-----------------GpesSGKTtLtlSViaqa
B Haemophilus_influenzae            IvEIF-----------------GpesSGKTtLtlSViaqa
B Histophilus_somni                 IvEIF-----------------GpesSGKTtLtlSViaqa
B Kineococcus_radiotolerans         VvEIY-----------------GpesSGKTtValhavaSa
B Leifsonia_xyli                    IvEIY-----------------GpesSGKTtLtlhaiaNa
B Mannheimia_succiniciproducens     VvEIF-----------------GpesSGKTtLtlSViaqa
B Nitrosomonas_europaea             IiEIY-----------------GpesSGKTtLtlqaiaem
B Nitrosomonas_eutropha             IiEIY-----------------GpesSGKTtLtlqViaem
B Oceanobacillus_iheyensis          VvEIY-----------------GpesSGKTtValhaiaea
B Pasteurella_multocida             IvEIF-----------------GpesSGKTtLtlSViaqa
B Photobacterium_profundum          IvEIY-----------------GpesSGKTtLtletiaaa
B Photorhabdus_luminescens          IvEIY-----------------GpesSGKTtLtlqViaaa
B Proteus_mirabilis                 IvEIY-----------------GpesSGKTtLtlqViaSa
B Pseudomonas_cepacia               VvEIY-----------------GpesSGKTtLtlqViael
B Pseudomonas_pseudomallei          VvEIY-----------------GpesSGKTtLtlqViaem
B Shewanella_amazonensis            IvEIY-----------------GpesSGKTtLtleViaaa
B Shewanella_putrefaciens           IvEIY-----------------GpesSGKTtLtleViaaa
B Streptomyces_avermitilis          VvEVY-----------------GpesSGKTtLtlhavaNa
B Vibrio_alginolyticus              IvEIY-----------------GpesSGKTtLtleLiaaa
B Vibrio_angustum                   IvEIY-----------------GpesSGKTtLtletiaaa
B Vibrio_cholerae                   IvEIF-----------------GpesSGKTtLtleLiaaa
B Vibrio_fischeri                   IvEIF-----------------GpesSGKTtLtleLiaaa
B Vibrio_parahaemolyticus           IvEIY-----------------GpesSGKTtLtleLiaaa
B Vibrio_splendidus                 IvEVY-----------------GpesSGKTtLtleLiaaa
B Vibrio_vulnificus                 IvEIF-----------------GpesSGKTtLtleLiaaa
B Yersinia_enterocolitica           IvEIY-----------------GpesSGKTtLtlqViaaa
B Cupriavidus_metallidurans-Q1LR74  VvEIY-----------------GpesSGKTtLtlqVvaem
B Cupriavidus_metallidurans-RECA    VvEIY-----------------GpesSGKTtLtlqVvaem
B Erwinia_carotovora-RECA           IvEIY-----------------GpesyGKTtLtlqViaaa
B Erwinia_carotovora-RECA_ERWCT     IvEIY-----------------GpesSGKTtLtlqViaaa
B Listeria_monocytogenes-RECA       IiEVY-----------------GpesSGKTtValhaiaev
B Listeria_monocytogenes-RECA_LISMF IiEVY-----------------GpesSGKTtValhaiaev
B Neisseria_gonorrhoeae-RECA        IvEIF-----------------GpesSGKTtLcleavaqc
B Neisseria_gonorrhoeae-RECA_VAR    IvEIF-----------------GpesSGKTtLcleavaqc
B Salmonella_typhi-RECA             IvEIY-----------------GpesSGKTtLtlqViaaa
B Salmonella_typhi-RECA_SALPA       IvEIY-----------------GpesSGKTtLtlqViaaa
B Streptomyces_coelicolor-RECA      VvEVY-----------------GpesSGKTtLtlhavaNa
B Streptomyces_coelicolor-RECA_STRL VvEVY-----------------GpesSGKTtLtlhavaNa
B Xylella_fastidiosa-RECA           VvEIY-----------------GpesSGKTtLtlqaiaqc
B Xylella_fastidiosa-RECA_XYLFT     VvEIY-----------------GpesSGKTtLtlqaiaqc
B Yersinia_pestis-RECA              IvEIY-----------------GpesSGKTtLtlqViaaa
B Yersinia_pestis-RECA_YERPS        IvEIY-----------------GpesSGKTtLtlqViaaa
B Mycobacterium_tuberculosis-RECA   ViEIY-----------------GpesSGKTtValhavaNa
B Mycobacterium_tuberculosis-RECA_M VvEIY-----------------GpesSGKTtValhavaNa
B Neisseria_meningitidis-RECA       IvEIF-----------------GpesSGKTtLcleavaqc
B Neisseria_meningitidis-RECA_NEIMA IvEIF-----------------GpesSGKTtLcleavaqc
B Neisseria_meningitidis-RECA_VAR   IvEIF-----------------GpesSGKTtLcleavaqc
B Xanthomonas_vasicola-RECA_XANAC   VvEIY-----------------GpesSGKTtLtlqaiaec
B Xanthomonas_vasicola-RECA_XANCP   VvEIY-----------------GpesSGKTtLtlqaiaec
B Xanthomonas_vasicola-YP_201580    VvEIY-----------------GpesSGKTtLtlqaiaqc
B Pseudomonas_aeruginosa-Q48F94     IvEIY-----------------GpesSGKTtLtlSViaqa
B Pseudomonas_aeruginosa-RECA       IvEIY-----------------GpesSGKTtLtlSViaea
B Pseudomonas_aeruginosa-RECA_PSEF5 IvEIY-----------------GpesSGKTtLtlSViaqa
B Pseudomonas_aeruginosa-RECA_PSEFL IvEIY-----------------GpesSGKTtLtlSViaqa
B Pseudomonas_aeruginosa-RECA_PSEPK IvEIY-----------------GpesSGKTtLtlSViaea
B Pseudomonas_aeruginosa-RECA_PSEPU IvEIY-----------------GpesSGKTtLtlSViaea
B Pseudomonas_aeruginosa-RECA_PSESM IvEIY-----------------GpesSGKTtLtlSViaqa
============================================================================
B DEINOCOCCUS_RADIODURANS           ITEIY-----------------GpesgGKTtLalaIvaqa
B Deinococcus_geothermalis          ITEIY-----------------GpesgGKTtLalSViaqa
B Thermus_aquaticus-RECA            VTEIF-----------------GpesgGKTtLalTIiaqa
B Thermus_aquaticus-RECA_THET2      IvEIY-----------------GpesgGKTtLalTIiaqa
B Thermus_aquaticus-RECA_THET8      IvEIY-----------------GpesgGKTtLalTIiaqa
B Thermus_aquaticus-RECA_THETH      IvEIY-----------------GpesgGKTtLalTIiaqa
============================================================================
  Consensus                         ItELFxxxxxxxxxxxxxxxxxGxfxSGKTqIxhslxvsx

                                           330       340       350       360
                                    ----:----|----:----|----:----|----:----|
  Consensus                         QxxxxxxxxxxxxxxxxxxxxxgxcvFVDxEntfrPerix
============================================================================
A PYROCOCCUS_FURIOSUS               Qlppeegg------------lnGsvIWIDtENTFRPERIr
A Archaeoglobus_fulgidus            Qlpedegg------------leGsvIiIDtENTFRPERIi
A Pyrococcus_abyssi                 Qlppeegg------------lnGsvIWIDtENTFRPERIr
============================================================================
A METHANOCOCCUS_VOLTAE              Qnp--eflfydeeavskgevaqpkaVYIDtEgTFRPERIm
A Methanococcus_jannaschii          Qcp--erivad-daikdeilnepkaVYIDtEgTFRPERIv
A Methanococcus_maripaludis         Qir--ekifadlegvveeeleapkaVYIDtEgTFRPERVv
============================================================================
A SULFOLOBUS_SOLFATARICUS           Qlppekgg------------lsGkaVYIDtEgTFRwERIe
A Desulfurococcus_amylolyticus      Qltpekgg------------lnGraVYIDtEgTFRwERIe
A Sulfolobus_acidocaldarius         Qlpqekgg------------lnGkaVYIDtEgTFRwERIe
A Sulfolobus_tokodaii               Qlplekgg------------lgGkaVYIDtEgTFRwERIe
A Aeropyrum_pernix-RADA             Qlpedkgg------------leGkaVYVDtEgTFRwERIe
A Aeropyrum_pernix-RADA_VAR_OH1     Qlpedkgg------------leGkaVYIDtEgTFRwERIe
A Aeropyrum_pernix-RADA_VAR_OH2     Qlpedkgg------------leGkaVYIDtEgTFRwERIe
A Aeropyrum_pernix-RADA_VAR_OH3     Qlpedkgg------------leGkaVYIDtEgTFRwERIe
A Aeropyrum_pernix-RADA_VAR_TB1     Qlpedkgg------------leGkaVYIDtEgTFRwERIe
A Aeropyrum_pernix-RADA_VAR_TB2     Qlpedkgg------------leGkaVYIDtEgTFRwERIe
A Aeropyrum_pernix-RADA_VAR_TB6     Qlpedkgg------------leGkaVYIDtEgTFRwERIe
============================================================================
* HUMAN                             Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* S_CEREVISIAE                      Qipldigg------------geGkCLYIDtEgTFRPvRLv
* Apis_mellifera                    Qlpidmgg------------aeGkCLYIDtEgTFRPERLi
* Aspergillus_flavus                Qlpfdmgg------------geGkCLYIDtEgTFRPvRLl
* Aspergillus_fumigatus             Qlpfdmgg------------geGkCLYIDtEgTFRPvRLl
* Bovine                            Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* C_elegans                         Qlpidmgg------------geGkCMYIDtnaTFRPERIi
* Candida_albicans                  Qlpidmgg------------geGkCLYIDtEgTFRPnRLv
* Candida_glabrata                  Qipldlgg------------geGkCLYIDtEgTFRPvRLv
* Canis_lupus                       Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* Chaetomium_globosum               Qlpfdmgg------------geGkCLYIDtEgTFRPvRLl
* Coccidioides_immitis              Qlpfdmgg------------geGkCLYIDtEgTFRPvRLl
* Coprinus_cinereus                 Qlpvsmgg------------geGkCLYIDtEgTFRPvRLl
* Cricetulus_griseus                Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* Cryptococcus_neoformans           Qlpvsmgg------------geGkCLYIDtEgTFRPvRMl
* Danio_rerio                       Qlpidqgg------------geGkaMYIDtEgTFRPERLl
* Debaryomyces_hansenii             Qlpidmgg------------geGkCLYIDtEgTFRPvRLv
* D_melanogaster                    Qlpisqkg------------geGkCMYIDtENTFRPERLa
* D_pseudoobscura                   Qlpisqkg------------geGkCLYIDtESTFRtERLs
* Emericella_nidulans               Qlpfdmgg------------geGkCLYIDtEgTFRPvRLl
* Encephalitozoon_cuniculi          Qlppeqgg------------ggGkaMYIDtEgTFRsERLv
* Eremothecium_gossypii             Qipldmgg------------geGkCLYIDtEgTFRPiRLv
* Chicken                           Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* Gibberella_zeae                   Qlpfdmgg------------geGkCMYIDtEgTFRPvRLl
* Kluyveromyces_lactis              Qipldmgg------------geGkCLYIDtEgTFRPiRLv
* Mouse                             Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* Neurospora_crassa                 Qlpfdmgg------------geGkCLYIDtEgTFRPvRLl
* Rabbit                            Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* Pichia_angusta                    Qlpidngg------------geGkCLYIDtEgTFRPiRLv
* Rat                               Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* Schizosaccharomyces_pombe         Qlpidmgg------------geGkCLYIDtEgTFRPvRLl
* Strongylocentrotus_purpuratus     Qlpidngg------------geGkCLYIDtEgTFRPERLi
* Tetraodon_nigroviridis            Qlpidqgg------------geGkaMYIDtEgTFRPERLl
* Tribolium_castaneum               Qlalesgg------------geGkCLYIDtEgTFRPERLl
* Ustilago_maydis                   Qlpvdmgg------------geGkCLYIDtENTFRPtRLl
* X_tropicalis                      Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* Yarrowia_lipolytica               Qlpidqgg------------geGkCLYIDtEgTFRPERLh
* X_laevis-RA51A                    Qlpidrgg------------geGkaMYIDtEgTFRPERLl
* X_laevis-RA51B                    Qlpidrgg------------geGkaMYIDtEgTFRPERLl
  Cryptosporidium_hominis           Qlpvehkg------------geGkCLWIDtEgTFRPERIv
  Cryptosporidium_parvum            Qlpvehkg------------geGkCLWIDtEgTFRPERIv
  Dictyostelium_discoideum          Qlgysqgg------------geGraLYIDtEgTFRPERLl
  Entamoeba_histolytica             Qlgiengg------------teGraIYIDtEgTFRPERLt
  Leishmania_donovani               Qlpisqgg------------aeGmaLYIDtEgTFRPERLv
  Leishmania_tropica                Qlpisqgg------------aeGmaLYIDtEgTFRPERLv
  Plasmodium_berghei                Qlpieqsg------------geGkCLWIDtEgTFRPERIv
  Plasmodium_falciparum             Qlpieqsg------------geGkCLWIDtEgTFRPERIv
  Tetrahymena_thermophila           Qlpkekgg------------geGkaMYIDtEgTFRPERLe
  Theileria_annulata                Qlpveqsg------------geGkCLWVDsEgTFRPERIv
  Theileria_parva                   Qlpveqsg------------geGkCLWVDsEgTFRPERIv
  Trypanosoma_brucei                Qlplsqgg------------geGmaLYIDtEgTFRPERLv
  Trypanosoma_cruzi                 Qlpisqgg------------aeGmaLYIDtEgTFRPERLv
P Arabidopsis_thaliana              Qlpmdqgg------------geGkaMYIDaEgTFRPQRLl
P Oryza_sativa                      Qlpldqgg------------geGkaLYIDaEgTFRPQRLl
P Maize-R51A1                       Qlpldqgg------------geGkaLYIDaEgTFRPQRLl
P Maize-R51A2                       Qlpldqgg------------geGkaLYIDaEgTFRPQRIl
============================================================================
B E_COLI                            Qre------------------gktCaFIDaEHaldPiyar
B MYCOBACTERIUM_SMEGMATIS           Qaa------------------gGiaaFIDaEHaldPEyak
B MYCOBACTERIUM_TUBERCULOSIS        Qaa------------------gGvaaFIDaEHaldPEyak
B Acinetobacter_calcoaceticus       Qka------------------gGtCaFIDaEHaldPQyar
B Actinobacillus_pleuropneumoniae   Qks------------------gktCaFIDaEHaldPvyar
B Actinobacillus_succinogenes       Qka------------------gkvCaFIDaEHaldPiyaa
B Actinomyces_bovis                 Qaa------------------gGvaaFIDaEHaldPDyar
B Azotobacter_vinelandii            Qkq------------------gatCaFVDaEHaldPDyaa
B Bacillus_clausii                  Qrn------------------gGqaaFIDaEHaldPvyas
B Bacillus_halodurans               Qrn------------------gGqaaFIDaEHaldPvyak
B Bacillus_licheniformis            Qqq------------------gGqaaFIDaEHaldPvyaq
B Bacillus_megaterium               Qqq------------------gGqaaFIDaEHaldPvyaq
B Bacillus_subtilis                 Qqq-------------------rtsaFIDaEHaldPvyaq
B Bordetella_pertussis              Qkl------------------gGtCaFVDaEHaldvQyas
B Burkholderia_fungorum             Qki------------------gGtaaFIDaEHaldiQyas
B Chromobacterium_violaceum         Qkl------------------gGtCaYIDaENaldPvyaq
B Clostridium_acetobutylicum        Qkk------------------gGaaaFIDaEHaldPQyar
B Clostridium_thermocellum          Qka------------------gGeaaFIDaEHaldPvyak
B Colwellia_psychrerythraea         Qrn------------------gkvCaFIDaEHaldPvyae
B Corynebacterium_efficiens         Qka------------------gGiaaFIDaEHaldPDyar
B Desulfotalea_psychrophila         Qkl------------------gGiaaFIDaEHaldtayae
B Enterococcus_faecalis             Qrn------------------gGtaaFIDaEHaldPQyaz
B Haemophilus_ducreyi               Qri------------------gktCaFIDaEHaldPvyar
B Haemophilus_influenzae            Qka------------------gktCaFIDaEHaldPiyaa
B Histophilus_somni                 Qka------------------gktCaFIDaEHaldPiyaa
B Kineococcus_radiotolerans         Qka------------------gGiaaFIDaEHaldPDyaa
B Leifsonia_xyli                    Qra------------------gGiaaFIDaEHaldPDyar
B Mannheimia_succiniciproducens     Qka------------------gkvCaFIDaEHaldPiyaa
B Nitrosomonas_europaea             Qkl------------------gGtaaFIDaEHaldPQyaq
B Nitrosomonas_eutropha             Qkl------------------gGtaaFIDaEHaldPQyaq
B Oceanobacillus_iheyensis          Qkq------------------gGqaaFIDaEHaldPvyak
B Pasteurella_multocida             Qke------------------gktCaFIDaEHaldPiyaa
B Photobacterium_profundum          Qrv------------------nktCaFIDaEHaldPiyaq
B Photorhabdus_luminescens          Qre------------------gktCaFIDaEHaldPiyak
B Proteus_mirabilis                 Qre------------------gkiCaFIDaEHaldPiyaq
B Pseudomonas_cepacia               Qkl------------------gGtaaFIDaEHaldvQyaa
B Pseudomonas_pseudomallei          Qkl------------------gGtaaFIDaEHaldvQyas
B Shewanella_amazonensis            Qre------------------gkvCaFIDaEHaldPvyar
B Shewanella_putrefaciens           Qre------------------gktCaFIDaEHaldPiyak
B Streptomyces_avermitilis          Qka------------------gGqvaFVDaEHaldPEyak
B Vibrio_alginolyticus              Qre------------------gktCaFIDaEHaldPvyak
B Vibrio_angustum                   Qrk------------------gktCaFIDaEHaldPiyaq
B Vibrio_cholerae                   Qre------------------gktCaFIDaEHaldPvyak
B Vibrio_fischeri                   Qre------------------gktCaFIDaEHaldPvyak
B Vibrio_parahaemolyticus           Qre------------------gktCaFIDaEHaldPvyak
B Vibrio_splendidus                 Qrv------------------gktCaFVDaEHaldPiyaq
B Vibrio_vulnificus                 Qre------------------gktCaFIDaEHaldPvyak
B Yersinia_enterocolitica           Qre------------------gktCaFIDaEHaldPiyak
B Cupriavidus_metallidurans-Q1LR74  Qkl------------------gGtCaFIDaEHaldvQyag
B Cupriavidus_metallidurans-RECA    Qkl------------------gGtCaFIDaEHaldvQyag
B Erwinia_carotovora-RECA           Qre------------------gkiCaFIDaEHaldPiyaq
B Erwinia_carotovora-RECA_ERWCT     Qre------------------gktCaFIDaEHaldPiyak
B Listeria_monocytogenes-RECA       Qaq------------------gGtaaFIDaEHaldPayak
B Listeria_monocytogenes-RECA_LISMF Qaq------------------gGtaaFIDaEHaldPayak
B Neisseria_gonorrhoeae-RECA        Qkn------------------gGvCaFVDaEHaFdPvyar
B Neisseria_gonorrhoeae-RECA_VAR    Qkn------------------gGvCaFVDaEHaFdPvyar
B Salmonella_typhi-RECA             Qre------------------gktCaFIDaEHaldPvyar
B Salmonella_typhi-RECA_SALPA       Qre------------------gktCaFIDaEHaldPvyar
B Streptomyces_coelicolor-RECA      Qka------------------gGqvaFVDaEHaldPEyak
B Streptomyces_coelicolor-RECA_STRL Qka------------------gGqvaFVDaEHaldPEyak
B Xylella_fastidiosa-RECA           Qkk------------------gGtaaFIDaEHaldPiyag
B Xylella_fastidiosa-RECA_XYLFT     Qkr------------------gGtaaFIDaEHaldPiyag
B Yersinia_pestis-RECA              Qre------------------gktCaFIDaEHaldPiyak
B Yersinia_pestis-RECA_YERPS        Qre------------------gktCaFIDaEHaldPiyak
B Mycobacterium_tuberculosis-RECA   Qaa------------------gGvaaFIDaEHaldPDyak
B Mycobacterium_tuberculosis-RECA_M Qaa------------------gGvaaFIDaEHaldPEyak
B Neisseria_meningitidis-RECA       Qkn------------------gGvCaFVDaEHaFdPvyar
B Neisseria_meningitidis-RECA_NEIMA Qkn------------------gGvCaFVDaEHaFdPvyar
B Neisseria_meningitidis-RECA_VAR   Qkn------------------gGvCaFVDaEHaFdPvyar
B Xanthomonas_vasicola-RECA_XANAC   Qkn------------------gGtaaFIDaEHaldPiyaa
B Xanthomonas_vasicola-RECA_XANCP   Qkl------------------gGtaaFIDaEHaldPiyaa
B Xanthomonas_vasicola-YP_201580    Qkl------------------gGtaaFIDaEHaldPvyaa
B Pseudomonas_aeruginosa-Q48F94     Qkm------------------gatCaFVDaEHaldPEyag
B Pseudomonas_aeruginosa-RECA       Qkq------------------gatCaFVDaEHaldPDyag
B Pseudomonas_aeruginosa-RECA_PSEF5 Qka------------------gatCaFVDaEHaldPEyag
B Pseudomonas_aeruginosa-RECA_PSEFL Qkm------------------gatCaFVDaEHaldPEyag
B Pseudomonas_aeruginosa-RECA_PSEPK Qkn------------------gatCaFVDaEHaldPEyag
B Pseudomonas_aeruginosa-RECA_PSEPU Qkn------------------gatCaFVDaEHaldPEyag
B Pseudomonas_aeruginosa-RECA_PSESM Qkm------------------gatCaFVDaEHaldPEyag
============================================================================
B DEINOCOCCUS_RADIODURANS           Qka------------------gGtCaFIDaEHaldPvyar
B Deinococcus_geothermalis          Qra------------------gGtCaFIDaEHaldPvyar
B Thermus_aquaticus-RECA            Qkg------------------gGvaaFVDaEHaldPlyak
B Thermus_aquaticus-RECA_THET2      Qrr------------------gGvaaFVDaEHaldPlyaq
B Thermus_aquaticus-RECA_THET8      Qrr------------------gGvaaFVDaEHaldPlyaq
B Thermus_aquaticus-RECA_THETH      Qrr------------------gGvaaFVDaEHaldPlyaq
============================================================================
  Consensus                         QxxxxxxxxxxxxxxxxxxxxxgxcvFVDxEntfrPerix

                                           370       380       390       400
                                    ----:----|----:----|----:----|----:----|
  Consensus                         qMxxxxxxxxxxxxxxlxxxxxMedIxxxRxxnxDqxlqI
============================================================================
A PYROCOCCUS_FURIOSUS               EIaqn---------rgLdpdevLKhIyvaRafNsNhqMlL
A Archaeoglobus_fulgidus            QMaea---------kgLdgnevLKNIyvaQayNsNhqMlL
A Pyrococcus_abyssi                 EIakn---------rgLdpdevLKhIyvaRafNsNhqMlL
============================================================================
A METHANOCOCCUS_VOLTAE              QMaeh---------agIdgqtvLDNtfvaRayNsDmqMlf
A Methanococcus_jannaschii          QMaea---------lgLdgnevLnNIfvaRayNsDmqMly
A Methanococcus_maripaludis         QMaeg---------agIdgqtvLDNtfvaRayNsDmqMlf
============================================================================
A SULFOLOBUS_SOLFATARICUS           nMaka---------lgLdidnvMnNIyyiRaiNtDhqIaI
A Desulfurococcus_amylolyticus      aMara---------lgLdpdkvMDNIyymRayNsDhqIaI
A Sulfolobus_acidocaldarius         aMakg---------agLesdiaMnNIyymRaiNsDhqMaI
A Sulfolobus_tokodaii               aMska---------igLepdsaMnNIyymRaiNsDhqMaI
A Aeropyrum_pernix-RADA             QMarg---------vgLdpdevMKNIywiRaiNshhqIaI
A Aeropyrum_pernix-RADA_VAR_OH1     QMarg---------vgLdpdevMKNIywiRaiNshhqIaI
A Aeropyrum_pernix-RADA_VAR_OH2     QMarg---------vgLdpdevMKNIywiRaiNshhqIaI
A Aeropyrum_pernix-RADA_VAR_OH3     QMarg---------vgLdpdevMKNIywiRaiNshhqIaI
A Aeropyrum_pernix-RADA_VAR_TB1     QMarg---------vgLdpdevMKNIywiRaiNshhqIaI
A Aeropyrum_pernix-RADA_VAR_TB2     QMarg---------vgLdpdevMKNIywiRaiNshhqIaI
A Aeropyrum_pernix-RADA_VAR_TB6     QMarg---------vgLdpdevMKNIywiRaiNshhqIaI
============================================================================
* HUMAN                             aVaer---------ygLsgsdvLDNVayaRafNtDhqtQL
* S_CEREVISIAE                      sIaqr---------fgLdpddaLnNVayaRayNaDhqLRL
* Apis_mellifera                    aVaer---------ykIagdsvLDNVacaRayNtDhqtQL
* Aspergillus_flavus                aVaqr---------ygLvgeevLDNVayaRayNsDhqLQL
* Aspergillus_fumigatus             aVaqr---------ygLvgeevLDNVayaRayNsDhqLQL
* Bovine                            aVaer---------ygLsgsdvLDNVayaRgfNtDhqtQL
* C_elegans                         aIaqr---------ynMdsahvLENIavaRayNsEhlMaL
* Candida_albicans                  sIaqr---------ygLnpndcLDNVayaRayNaEhqLnL
* Candida_glabrata                  sIaqr---------fgLdpddaLnNVayaRayNaDhqMRL
* Canis_lupus                       aVaer---------ygLsgsdvLDNVayaRgfNtDhqtQL
* Chaetomium_globosum               aVanr---------ygLsgeevLDNVayaRayNsDhqLQL
* Coccidioides_immitis              aVaqr---------ygLageevLDNVayaRayNsDhqLQL
* Coprinus_cinereus                 aVaer---------fgLngeevLDNVayaRayNaDhqqaL
* Cricetulus_griseus                aVaer---------ygLsgsdvLDNVayaRgfNtDhqtQL
* Cryptococcus_neoformans           aVaer---------ygLdgeevLDNIayaRayNaDhqLQL
* Danio_rerio                       aVaer---------ygLvgsdvLDNVayaRafNtDhqtQL
* Debaryomyces_hansenii             sIaqr---------ygLnpedcLDNVayaRayNaEhqfQL
* D_melanogaster                    aIaqr---------ykLnesevLDNVaftRahNsDQqtKL
* D_pseudoobscura                   aIaqr---------fkLnesevLDNVscaRayNsDQqtKL
* Emericella_nidulans               aVaqr---------ygLvgeevLDNVayaRayNsDhqLQL
* Encephalitozoon_cuniculi          pIaer---------fgLdpnevMDNIsyaRayNsDhqsQL
* Eremothecium_gossypii             sIaqr---------fgLdpddaLnNVayaRayNaDhqLRL
* Chicken                           aVaer---------ygLsgsdvLDNVayaRgfNtDhqtQL
* Gibberella_zeae                   gVanr---------fgLsgeevLDNVayaRayNsDhqLQL
* Kluyveromyces_lactis              sIaqr---------fgLdpddaLnNVayaRayNaDhqLKL
* Mouse                             aVaer---------ygLsgsdvLDNVayaRgfNtDhqtQL
* Neurospora_crassa                 aVanr---------ygLsgeevLDNVayaRayNsDhqLQL
* Rabbit                            aVaer---------ygLsgsdvLDNVayaRgfNtDhqtQL
* Pichia_angusta                    aIarr---------fgLdenetLDNVayaRayNaDhqLQL
* Rat                               aVaer---------ygLsgsdvLDNVayaRgfNtDhqtQL
* Schizosaccharomyces_pombe         aVadr---------ygLngeevLDNVayaRayNaDhqLEL
* Strongylocentrotus_purpuratus     aVadr---------ynLsgsdvLDNVayaRahNsDhqsQL
* Tetraodon_nigroviridis            aVaerrvsgrslavygLvgsdvLDNVayaRafNtDhqtQL
* Tribolium_castaneum               pVaer---------ynMdgqqvLDNVvfaRafNtDhqtEL
* Ustilago_maydis                   aVaer---------fgLngeevLDNVayaRayNaDhqLQL
* X_tropicalis                      aVaer---------ygLsgsdvLDNVayaRafNtDhqtQL
* Yarrowia_lipolytica               QIarr---------ygLngdevLDNVayaRahNsDhqMQL
* X_laevis-RA51A                    aVaer---------ygLsgsdvLDNVayaRafNtDhqtQL
* X_laevis-RA51B                    aVaer---------ygLsgsdvLDNVayaRafNtDhqtQL
  Cryptosporidium_hominis           QIadr---------fnLnasdcLDNIayaRgfNtEhqMdL
  Cryptosporidium_parvum            QIadr---------fnLnasdcLDNIayaRgfNtEhqMdL
  Dictyostelium_discoideum          aIaer---------ynLngehvLDNVsyaRayNsDhqLEL
  Entamoeba_histolytica             QIaek---------ygLnseeaLnNVavaRahNtEhqMQL
  Leishmania_donovani               aVaer---------ykLdpedvLaNVacaRafNtDhqqQL
  Leishmania_tropica                aVaer---------ykLdpedvLaNVacaRafNtDhqqQL
  Plasmodium_berghei                aIakr---------ygLhptdcLnNIayaKayNcDhqtEL
  Plasmodium_falciparum             aIakr---------ygLhptdcLnNIayaKayNcDhqtEL
  Tetrahymena_thermophila           sIaer---------fgLdpqecMENVayaRafNcDQqnKL
  Theileria_annulata                sIakr---------fgLspsdcLDNVayaRayNtDhqLEL
  Theileria_parva                   sIakr---------fgLspsdcLDNVayaRayNtDhqLEL
  Trypanosoma_brucei                aVaer---------ysLdpeavLENVacaRayNtDhqqQL
  Trypanosoma_cruzi                 aVaer---------ykLdpqdvLsNVacaRafNtDhqqQL
P Arabidopsis_thaliana              QIadr---------fgLngadvLENVayaRayNtDhqsRL
P Oryza_sativa                      QIadr---------fgLngadvLENVayaRayNtDhqsRL
P Maize-R51A1                       QIadr---------fgLngadvLENVayaRayNtDhqsRL
P Maize-R51A2                       QIadr---------fgLngadvLENVayaRayNtDhqsRL
============================================================================
B E_COLI                            KLg---------------v--dIDNLlcsQpdtgEQaLEI
B MYCOBACTERIUM_SMEGMATIS           KLg---------------v--dtDsLlvsQpdtgEQaLEI
B MYCOBACTERIUM_TUBERCULOSIS        KLg---------------v--dtDsLlvsQpdtgEQaLEI
B Acinetobacter_calcoaceticus       KLg---------------v--dIDNLlvsQpdHgEQaLEI
B Actinobacillus_pleuropneumoniae   KLg---------------v--dtDaLlisQpdNgEQaLEI
B Actinobacillus_succinogenes       KLg---------------v--dVKELfisQpdNgEQaLEI
B Actinomyces_bovis                 KLg---------------v--dtDaLlvsQpdtgEQaLEI
B Azotobacter_vinelandii            KLg---------------v--nVDDLlvsQpdtgEQaLEI
B Bacillus_clausii                  KLg---------------v--nIDELllsQpdtgEQaLEI
B Bacillus_halodurans               KLg---------------v--nIDELllsQpdtgEQaLEI
B Bacillus_licheniformis            KLg---------------v--nIDELllsQpdtgEQaLEI
B Bacillus_megaterium               KLg---------------v--nIDELllsQpdtgEQaLEI
B Bacillus_subtilis                 KLg---------------v--nIEELllsQpdtgEQaLEI
B Bordetella_pertussis              KLg---------------v--nLtDLlisQpdtgEQaLEI
B Burkholderia_fungorum             KLg---------------v--nVnDLlvsQpdtgEQaLEI
B Chromobacterium_violaceum         KLg---------------v--nVEDLlisQpdtgEQaLEI
B Clostridium_acetobutylicum        aLg---------------v--dIDNLvvsQpdtgEQaLEI
B Clostridium_thermocellum          nLg---------------v--dIENLivsQpdtgEQaLEI
B Colwellia_psychrerythraea         KLg---------------v--nIDELlisQpdtgEQaLEI
B Corynebacterium_efficiens         KLg---------------v--dtDaLlvsQpdtgEQaLEI
B Desulfotalea_psychrophila         KLg---------------v--nIDNLlvsQpdfgEQaLEI
B Enterococcus_faecalis             KLg---------------v--nIDELllsQpdtgEQgLEI
B Haemophilus_ducreyi               KLg---------------v--dIDaLlisQpdNgEQaLEI
B Haemophilus_influenzae            KLg---------------v--dVKELfvsQpdNgEQaLEI
B Histophilus_somni                 KLg---------------v--dVKELlisQpdNgEQaLEI
B Kineococcus_radiotolerans         KLg---------------v--dtDaLlvsQpdtgEQaLEI
B Leifsonia_xyli                    KLg---------------v--dIDaLlvsQpdtgEQaLEI
B Mannheimia_succiniciproducens     KLg---------------v--dVKELlvsQpdNgEQaLEI
B Nitrosomonas_europaea             KIg---------------v--nVQELlisQpdNgEQaLEI
B Nitrosomonas_eutropha             KIg---------------v--nVQELlisQpdNgEQaLEI
B Oceanobacillus_iheyensis          aLg---------------v--nIDELllsQpdtgEQaLEI
B Pasteurella_multocida             KLg---------------v--nVnELlvsQpdNgEQaLEI
B Photobacterium_profundum          KLg---------------v--dIDqLlvsQpdtgEQaLEI
B Photorhabdus_luminescens          KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Proteus_mirabilis                 KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Pseudomonas_cepacia               KLg---------------v--nVpELlisQpdtgEQaLEI
B Pseudomonas_pseudomallei          KLg---------------v--nVpELlisQpdtgEQaLEI
B Shewanella_amazonensis            KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Shewanella_putrefaciens           KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Streptomyces_avermitilis          KLg---------------v--dIDNLilsQpdNgEQaLEI
B Vibrio_alginolyticus              KLg---------------v--dIDaLlvsQpdtgEQaLEI
B Vibrio_angustum                   KLg---------------v--dIDqLlvsQpdtgEQaLEI
B Vibrio_cholerae                   KLg---------------v--nIDELlvsQpdtgEQaLEI
B Vibrio_fischeri                   KLg---------------v--nIDELlvsQpdtgEQaLEI
B Vibrio_parahaemolyticus           KLg---------------v--dIDaLlvsQpdtgEQaLEI
B Vibrio_splendidus                 KLg---------------v--dIDaLlvsQpdtgEQaLEI
B Vibrio_vulnificus                 KLg---------------v--nIDqLlvsQpdtgEQaLEI
B Yersinia_enterocolitica           KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Cupriavidus_metallidurans-Q1LR74  KLg---------------v--dVgNLlisQpdtgEQaLEI
B Cupriavidus_metallidurans-RECA    KLg---------------v--dVgNLlisQpdtgEQaLEI
B Erwinia_carotovora-RECA           KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Erwinia_carotovora-RECA_ERWCT     KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Listeria_monocytogenes-RECA       nLg---------------v--nIDELllsQpdtgEQaLEI
B Listeria_monocytogenes-RECA_LISMF nLg---------------v--nIDELllsQpdtgEQaLEI
B Neisseria_gonorrhoeae-RECA        KLg---------------v--kVEELylsQpdtgEQaLEI
B Neisseria_gonorrhoeae-RECA_VAR    KLg---------------v--kVEELylsQpdtgEQaLEI
B Salmonella_typhi-RECA             KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Salmonella_typhi-RECA_SALPA       KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Streptomyces_coelicolor-RECA      KLg---------------v--dIDNLilsQpdNgEQaLEI
B Streptomyces_coelicolor-RECA_STRL KLg---------------v--dIDNLilsQpdNgEQaLEI
B Xylella_fastidiosa-RECA           KLg---------------v--nVDDLllsQpdtgEQaLEI
B Xylella_fastidiosa-RECA_XYLFT     KLg---------------v--nVDDLllsQpdtgEQaLEI
B Yersinia_pestis-RECA              KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Yersinia_pestis-RECA_YERPS        KLg---------------v--dIDNLlcsQpdtgEQaLEI
B Mycobacterium_tuberculosis-RECA   KLg---------------v--dtDsLlvsQpdtgEQaLEI
B Mycobacterium_tuberculosis-RECA_M KLg---------------v--dtDsLlvsQpdtgEQaLEI
B Neisseria_meningitidis-RECA       KLg---------------v--kVEELylsQpdtgEQaLEI
B Neisseria_meningitidis-RECA_NEIMA KLg---------------v--kVEELylsQpdtgEQaLEI
B Neisseria_meningitidis-RECA_VAR   KLg---------------v--kVEELylsQpdtgEQaLEI
B Xanthomonas_vasicola-RECA_XANAC   KLg---------------v--nVDDLllsQpdtgEQaLEI
B Xanthomonas_vasicola-RECA_XANCP   KLg---------------v--nVDDLllsQpdtgEQaLEI
B Xanthomonas_vasicola-YP_201580    KLg---------------v--nVDDLllsQpdtgEQaLEI
B Pseudomonas_aeruginosa-Q48F94     KLg---------------v--nVDDLlvsQpdtgEQaLEI
B Pseudomonas_aeruginosa-RECA       KLg---------------v--nVDDLlvsQpdtgEQaLEI
B Pseudomonas_aeruginosa-RECA_PSEF5 KLg---------------v--nVDDLlvsQpdtgEQaLEI
B Pseudomonas_aeruginosa-RECA_PSEFL KLg---------------v--nVDDLlvsQpdtgEQaLEI
B Pseudomonas_aeruginosa-RECA_PSEPK KLg---------------v--nVDDLlvsQpdtgEQaLEI
B Pseudomonas_aeruginosa-RECA_PSEPU KLg---------------v--nVDDLlvsQpdtgEQaLEI
B Pseudomonas_aeruginosa-RECA_PSESM KLg---------------v--nVDDLlvsQpdtgEQaLEI
============================================================================
B DEINOCOCCUS_RADIODURANS           aLg---------------v--ntDELlvsQpdNgEQaLEI
B Deinococcus_geothermalis          sLg---------------v--ntDELlvsQpdNgEQaLEI
B Thermus_aquaticus-RECA            KLg---------------v--dVQELlvsQpdtgEQaLEI
B Thermus_aquaticus-RECA_THET2      RLg---------------v--qVEDLlvsQpdtgEQaLEI
B Thermus_aquaticus-RECA_THET8      RLg---------------v--qVEDLlvsQpdtgEQaLEI
B Thermus_aquaticus-RECA_THETH      RLg---------------v--qVEDLlvsQpdtgEQaLEI
============================================================================
  Consensus                         qMxxxxxxxxxxxxxxlxxxxxMedIxxxRxxnxDqxlqI

                                           410       420       430       440
                                    ----:----|----:----|----:----|----:----|
  Consensus                         vexlxqxxxxxxxxxxxxixLVVVDSvxalfrxefigrdx
============================================================================
A PYROCOCCUS_FURIOSUS               VQqaedkik-ellntdrpVkLLIVDSLtshFRsEYIGRga
A Archaeoglobus_fulgidus            VDnakElae-klkkegrpVrLIIVDSLmshFRaEYVGRgt
A Pyrococcus_abyssi                 VQqaedkik-ellntdkpVkLLIVDSLtshFRsEYIGRga
============================================================================
A METHANOCOCCUS_VOLTAE              aEkIedliqegn-----nIkLVVIDSLtstFRnEYtGRgk
A Methanococcus_jannaschii          aEnVenliregh-----nIkLVIVDSLtstFRtEYIGRgk
A Methanococcus_maripaludis         aEkIedlikggn-----nIkLVIIDSLtstFRnEFtGRgk
============================================================================
A SULFOLOBUS_SOLFATARICUS           VDdLqElvs-kdp----sIkLIVVDSVtshFRaEYpGREn
A Desulfurococcus_amylolyticus      VDeLftfvp-kn-----dVrLVILDSVtshFRaEYpGREh
A Sulfolobus_acidocaldarius         VDdLqElit-kdp----aIkLIIVDSItshFRaEYpGREn
A Sulfolobus_tokodaii               VDdLqElis-kdp----aIkLVIVDSVtshFRaEFpGREn
A Aeropyrum_pernix-RADA             VDkLftmvk-nd-----nIkLVVVDSVtshFRaEFpGREn
A Aeropyrum_pernix-RADA_VAR_OH1     VDkLftmvk-nd-----nIkLVVVDSVtshFRaEFpGREn
A Aeropyrum_pernix-RADA_VAR_OH2     VDkLftmvk-nd-----nIrLVVVDSVtshFRaEFpGREn
A Aeropyrum_pernix-RADA_VAR_OH3     VDkLftmvk-nd-----nIkLVVVDSVtshFRvEFpGREn
A Aeropyrum_pernix-RADA_VAR_TB1     VDkLftmvk-nd-----nIkLVVVDSVtshFRaEFpGREn
A Aeropyrum_pernix-RADA_VAR_TB2     VDkLftmvk-nd-----nIkLVVVDSVtshFRaEFpGREn
A Aeropyrum_pernix-RADA_VAR_TB6     VDkLftmvk-nd-----nIkLVVVDSVtshFRaEFpGREn
============================================================================
* HUMAN                             Lyqasammv-es-----ryaLLIVDSatALYRtDYsGR--
* S_CEREVISIAE                      LDaaaQmms-es-----rfsLIVVDSVmALYRtDFsGR--
* Apis_mellifera                    Liqasammt-es-----ryaLLIVDSatgLYRtEYsGR--
* Aspergillus_flavus                LnqasQmmc-et-----rfsLLVVDSatALYRtDFnGR--
* Aspergillus_fumigatus             LnqasQmmc-et-----rfsLLVVDSatsLYRtDFnGR--
* Bovine                            Lyqasammv-es-----ryaLLIVDSatALYRtDYsGR--
* C_elegans                         Iiragamms-es-----ryaVVIVDcatAhFRnEYtGR--
* Candida_albicans                  LniaaEmma-es-----rfsLLIVDSImsLYRtDYaGR--
* Candida_glabrata                  LDaaaQmms-es-----rfsLIVVDSVmALYRtDFsGR--
* Canis_lupus                       Lyqasammv-es-----ryaLLIVDSatALYRtDYsGR--
* Chaetomium_globosum               Lnqaaammc-et-----rfsLLVVDSatsLYRtDFLGR--
* Coccidioides_immitis              LnqasQmmc-et-----rfsLLVVDSatsLYRtDFsGR--
* Coprinus_cinereus                 Ltsasalms-es-----rfcLLIVDSctALYRtDFsGR--
* Cricetulus_griseus                Lyqasammv-es-----ryaLLIVDSatALYRtDYsGR--
* Cryptococcus_neoformans           Lvqasamma-es-----rfsLLIVDSctsLYRtDFsGR--
* Danio_rerio                       Lyqasammt-es-----ryaLLIVDSatALYRtDYsGR--
* Debaryomyces_hansenii             LnhaaQmms-es-----rfscLIVDSImsLYRtDYsGR--
* D_melanogaster                    IQmaagmlf-es-----ryaLLIVDSamALYRsDYIGR--
* D_pseudoobscura                   LQmaagmlf-et-----ryaaVIVDSVmALYRsDYIGR--
* Emericella_nidulans               LnqasQmmc-et-----rfsLLVVDSatsLYRtDFnGR--
* Encephalitozoon_cuniculi          Likasamms-es-----kysVLIIDSatALYRtDFsGR--
* Eremothecium_gossypii             LDaaaQmms-es-----rfsLIVVDSImALYRtDFsGR--
* Chicken                           Lyqasamma-es-----ryaLLIVDSatALYRtDYsGR--
* Gibberella_zeae                   Lnqaaammc-et-----rfsLLIVDSatsLYRtDFcGR--
* Kluyveromyces_lactis              LDaaaQmms-es-----rfsLIIVDSImALYRtDFsGR--
* Mouse                             Lyqasammv-es-----ryaLLIVDSatALYRtDYsGR--
* Neurospora_crassa                 Lnqaaammc-et-----rfsLLIVDSatsLYRtDFLGR--
* Rabbit                            Lyqasammv-es-----ryaLLIVDSatALYRtDYsGR--
* Pichia_angusta                    Lhqaasmmt-es-----rfsLLIVDSImALYRtDYsGR--
* Rat                               Lyqasammv-es-----ryaLLIVDSatALYRtDYsGR--
* Schizosaccharomyces_pombe         LQqaanmms-es-----rfsLLVVDSctALYRtDFsGR--
* Strongylocentrotus_purpuratus     Llqasamma-es-----ryaLLIVDSatALYRtDYsGR--
* Tetraodon_nigroviridis            Lyqasamma-es-----ryaLLIVDSatALYRtDYsGRvw
* Tribolium_castaneum               Lvhaaammm-es-----rycLLIVDSatsLYRtDYsGR--
* Ustilago_maydis                   Lmqasamma-es-----rfsLLIVDSLtsLYRtDFsGR--
* X_tropicalis                      Lyqasamma-es-----ryaLLIVDSatALYRtDYsGR--
* Yarrowia_lipolytica               LQmaanmmt-ks-----rfscLIVDSImALYRtDYaGR--
* X_laevis-RA51A                    Lyqasamma-es-----ryaLLIVDSatALYRtDYsGR--
* X_laevis-RA51B                    Lyqasamma-es-----ryaLLIVDSatALYRtDYsGR--
  Cryptosporidium_hominis           LQsavammt-es-----rfaLMIVDSatALYRsEYnGR--
  Cryptosporidium_parvum            LQsavammt-es-----rfaLMIVDSatALYRsEYnGR--
  Dictyostelium_discoideum          Lvqasamms-es-----ryaLLIVDSatALYRtDYaGR--
  Entamoeba_histolytica             LQmasglma-ke-----rygLLIIDSatALYRtDYsGR--
  Leishmania_donovani               Llqasamma-en-----rfaLIIVDSatALYRtDYsGR--
  Leishmania_tropica                Llqasamma-en-----rfaLIIVDSatALYRtDYsGR--
  Plasmodium_berghei                Lidasamma-dt-----rfaLLIVDSatALYRsEYtGR--
  Plasmodium_falciparum             Lidasamma-da-----rfaLLIVDSatALYRsEYIGR--
  Tetrahymena_thermophila           Lvqaaalma-es-----kyaLLIVDSatALYRtDYsGR--
  Theileria_annulata                Lveasamma-qt-----rfaLLIVDSatsLYRsDYsGR--
  Theileria_parva                   Lveasamma-qt-----rfaLLIVDSatsLYRsDYsGR--
  Trypanosoma_brucei                Llqasatma-eh-----rVaIIVVDSatALYRtDYnGR--
  Trypanosoma_cruzi                 Llqasamma-en-----rfaIIIVDSatALYRtDYsGR--
P Arabidopsis_thaliana              Lleaasmmi-et-----rfaLLIVDSatALYRtDFsGR--
P Oryza_sativa                      Lleaasmmi-et-----rfaLMIVDSatALYRtDFsGR--
P Maize-R51A1                       Lleaasmmi-et-----rfaLMVVDSatALYRtDFsGR--
P Maize-R51A2                       Lleaasmmv-et-----rfaLMVVDSatALYRtDFsGR--
============================================================================
B E_COLI                            cDaLaR-sg--a------VdVIVVDSVaALtpkaeIegEi
B MYCOBACTERIUM_SMEGMATIS           aDmLvR-sg--a------LdIIVIDSVaALvpraeIegEm
B MYCOBACTERIUM_TUBERCULOSIS        aDmLiR-sg--a------LdIVLIDSVaALvpraeLegEm
B Acinetobacter_calcoaceticus       aDmLvR-sg--a------IdLIVVDSVaALtpkaeIegEm
B Actinobacillus_pleuropneumoniae   cDaLvR-sg--a------VdVIIVDSVaALtpkaeIegDm
B Actinobacillus_succinogenes       cDaLvR-sg--a------IdVIIVDSVaALtpkaeIegDm
B Actinomyces_bovis                 aDmLvR-sg--a------IdIIVIDSVaALvpraeIegEm
B Azotobacter_vinelandii            tDmLvR-sn--a------VdVIIVDSVaALvpkaeIegEm
B Bacillus_clausii                  aEaLvR-sg--a------LdIIVIDSVaALvpkaeIegEm
B Bacillus_halodurans               aEaLvR-sg--a------IdVIVIDSVaALvpkaeIegEm
B Bacillus_licheniformis            aEaLvR-sg--a------VdIVVIDSVaALvpkaeIegDm
B Bacillus_megaterium               aEaLvR-sg--a------VdIIVVDSVaALvpkaeIegEm
B Bacillus_subtilis                 aEaLvR-sg--a------VdIVVVDSVaALvpkaeIegDm
B Bordetella_pertussis              tDaLvR-sg--s------VdLIVIDSVaALvpkaeIegEm
B Burkholderia_fungorum             aDaLvR-sg--s------IdMIVIDSVaALvpkaeIegEm
B Chromobacterium_violaceum         cDmLvR-ss--g------VdVIVVDSVaALvpkaeIegEm
B Clostridium_acetobutylicum        aEaLvR-sg--a------IdVIVVDSVaALvpkaeIegEm
B Clostridium_thermocellum          aEaLvR-sg--a------IdVIVIDSVaALvpkaeIdgEm
B Colwellia_psychrerythraea         VDmLtR-sg--a------IdVIVVDSVaALtpkaeIegDm
B Corynebacterium_efficiens         aDmLvR-sg--a------IdILVIDSVaALtpkaeIegEm
B Desulfotalea_psychrophila         aEiLiR-sg--g------VdIIVVDSVaALtpkaeIdgNv
B Enterococcus_faecalis             aDaLvs-sg--a------IdIVVIDSVaALvpraeIdgEm
B Haemophilus_ducreyi               cDaLvR-sg--a------VdVIIVDSVaALtpkaeIegDm
B Haemophilus_influenzae            cDaLvR-sg--a------IdVIIVDSVaALtpkaeIegDm
B Histophilus_somni                 cDaLvR-sg--a------VdVVIVDSVaALtpkaeIegEm
B Kineococcus_radiotolerans         aDmLiR-sg--a------LdIIVIDSVaALvpkaeIegEm
B Leifsonia_xyli                    aDmLvR-sg--s------IdLIVIDSVaALvpraeIegEm
B Mannheimia_succiniciproducens     cDaLvR-sg--a------VdVIIVDSVaALtpkaeIegDm
B Nitrosomonas_europaea             tDmLvR-sg--s------VdVVVVDSVaALtpraeIegEm
B Nitrosomonas_eutropha             tDmLvR-sg--s------VdIVVIDSVaALtpraeIegEm
B Oceanobacillus_iheyensis          aEaLvR-sg--a------VdIIVVDSVaALvpkaeIegEm
B Pasteurella_multocida             cDaLvR-sg--a------VdVIIVDSVaALtpkaeIegEm
B Photobacterium_profundum          cDaLaR-sg--a------VdLIVIDSVaALtpkaeIegEm
B Photorhabdus_luminescens          cDaLtR-sg--a------VdVIIVDSVaALtpkaeIegEi
B Proteus_mirabilis                 cDaLsR-sg--a------VdVIVVDSVaALtpkaeIegEi
B Pseudomonas_cepacia               tDaLvR-sg--s------IdMIVIDSVaALvpkaeIegEm
B Pseudomonas_pseudomallei          VDaLvR-sg--s------IdMIVIDSVaALvpkaeIegEm
B Shewanella_amazonensis            cDaLtR-sg--a------VdVIIVDSVaALvpkaeIegEi
B Shewanella_putrefaciens           cDaLtR-sg--a------VdVIIVDSVaALtpkaeIegEi
B Streptomyces_avermitilis          VDmLvR-sg--a------LdLIVIDSVaALvpraeIegEm
B Vibrio_alginolyticus              cDaLaR-sg--a------IdVMVVDSVaALtpkaeIegEm
B Vibrio_angustum                   cDaLaR-sg--a------VdLIVVDSVaALtpkaeIegEm
B Vibrio_cholerae                   cDaLaR-sg--a------VdVIVVDSVaALtpkaeIegEm
B Vibrio_fischeri                   cDaLaR-sg--a------VdVMVIDSVaALtpkaeIegEm
B Vibrio_parahaemolyticus           cDaLaR-sg--a------IdVMVVDSVaALtpkaeIegEm
B Vibrio_splendidus                 cDaLaR-sg--a------IdVLVIDSVaALtpkaeIegEm
B Vibrio_vulnificus                 cDaLaR-sg--a------VdVIVVDSVaALtpkaeIegEm
B Yersinia_enterocolitica           cDaLtR-sg--a------VdVIIVDSVaALtpkaeIegEi
B Cupriavidus_metallidurans-Q1LR74  tDaLvR-sg--s------IdLIVIDSVaALvpkaeIegEm
B Cupriavidus_metallidurans-RECA    tDaLvR-sg--s------IdLIVIDSVaALvpkaeIegEm
B Erwinia_carotovora-RECA           cDaLsR-sg--a------VdVIVVDSVaALtpkaeIegEi
B Erwinia_carotovora-RECA_ERWCT     cDaLtR-sg--a------VdVIIVDSVaALtpkaeIegEi
B Listeria_monocytogenes-RECA       aEaLvR-sg--a------VdMLVIDSVaALvpraeIegEm
B Listeria_monocytogenes-RECA_LISMF aEaLvR-sg--a------VdMLVIDSVaALvpraeIegEm
B Neisseria_gonorrhoeae-RECA        cDtLvR-sg--g------IdMVVVDSVaALvpkaeIegDm
B Neisseria_gonorrhoeae-RECA_VAR    cDtLvR-sg--g------IdMVVVDSVaALvpkaeIegDm
B Salmonella_typhi-RECA             cDaLaR-sg--a------VdVIVVDSVaALtpkaeIegEi
B Salmonella_typhi-RECA_SALPA       cDaLaR-sg--a------VdVIVVDSVaALtpkaeIegEi
B Streptomyces_coelicolor-RECA      VDmLvR-sg--a------LdLIVIDSVaALvpraeIegEm
B Streptomyces_coelicolor-RECA_STRL VDmLvR-sg--a------LdLIVIDSVaALvpraeIegEm
B Xylella_fastidiosa-RECA           aDmLvR-sg--s------IdIMVIDSVaALtpraeIegEm
B Xylella_fastidiosa-RECA_XYLFT     aDmLvR-sg--s------IdIMVIDSVaALtpraeIegEm
B Yersinia_pestis-RECA              cDaLtR-sg--a------VdVIIVDSVaALtpkaeIegEi
B Yersinia_pestis-RECA_YERPS        cDaLtR-sg--a------VdVIIVDSVaALtpkaeIegEi
B Mycobacterium_tuberculosis-RECA   aDmLiR-sg--a------LdIVVIDSVaALvpraeLegEm
B Mycobacterium_tuberculosis-RECA_M aDmLiR-sg--a------LdILVIDSVaALvpraeLegEm
B Neisseria_meningitidis-RECA       cDtLvR-sg--g------IdMVVVDSVaALvpkaeIegDm
B Neisseria_meningitidis-RECA_NEIMA cDtLvR-sg--g------IdMVVVDSVaALvpkaeIegDm
B Neisseria_meningitidis-RECA_VAR   cDtLvR-sg--g------VdMVVVDSVaALvpkaeIegDm
B Xanthomonas_vasicola-RECA_XANAC   aDmLvR-sg--s------VdIVVVDSVaALtpkaeIegEm
B Xanthomonas_vasicola-RECA_XANCP   aDmLvR-ss--s------VdIVVIDSVaALtpkaeIegEm
B Xanthomonas_vasicola-YP_201580    aDmLvR-ss--s------VdIVVIDSVaALtpkaeIegEm
B Pseudomonas_aeruginosa-Q48F94     tDmLvR-sn--a------IdVIVVDSVaALvpkaeIegEm
B Pseudomonas_aeruginosa-RECA       tDmLvR-sn--a------VdVIIVDSVaALvpkaeIegEm
B Pseudomonas_aeruginosa-RECA_PSEF5 tDmLvR-sn--a------VdVIIVDSVaALvpkaeIegEm
B Pseudomonas_aeruginosa-RECA_PSEFL tDmLvR-sn--a------IdVIVVDSVaALvpkaeIegEm
B Pseudomonas_aeruginosa-RECA_PSEPK tDmLvR-sn--a------VdVIIVDSVaALvpkaeIegEm
B Pseudomonas_aeruginosa-RECA_PSEPU tDmLvR-sn--a------VdVIIVDSVaALvpkaeIegEm
B Pseudomonas_aeruginosa-RECA_PSESM tDmLvR-sn--a------IdVIVVDSVaALvpkaeIegEm
============================================================================
B DEINOCOCCUS_RADIODURANS           MElLvR-sg--a------IdVVVVDSVaALtpraeIegDm
B Deinococcus_geothermalis          MElLvR-sg--a------IdVVVVDSVaALtpraeIegEm
B Thermus_aquaticus-RECA            VElLaR-sg--a------VdVIVVDSVaALvpkaeIegEm
B Thermus_aquaticus-RECA_THET2      VElLaR-sg--a------VdVIVVDSVaALvpraeIegEm
B Thermus_aquaticus-RECA_THET8      VElLaR-sg--a------VdVIVVDSVaALvpraeIegEm
B Thermus_aquaticus-RECA_THETH      VElLaR-sg--a------VdVIVVDSVaALvpgaeIegEm
============================================================================
  Consensus                         vexlxqxxxxxxxxxxxxixLVVVDSvxalfrxefigrdx

                                           450       460       470       480
                                    ----:----|----:----|----:----|----:----|
  Consensus                         gexnxxmRqqxxxLsQxLRqLxxlxeqxxxxvIxxNqixx
============================================================================
A PYROCOCCUS_FURIOSUS               la----eRQQ--kLaKhLadLhrLanlydiaVfvtNQVqa
A Archaeoglobus_fulgidus            la----dRQQ--kLNRhLhdLmkfgElynaaIVvtNQVma
A Pyrococcus_abyssi                 la----eRQQ--kLaKhLadLhrLanlyeiaVfvtNQVqa
============================================================================
A METHANOCOCCUS_VOLTAE              la----eRQQ--kLgRhMatLnkLaDlfncvVLvtNQVsa
A Methanococcus_jannaschii          la----eRQQ--kLgRhMatLnkLaDiyncvVIvtNQVaa
A Methanococcus_maripaludis         la----eRQQ--kLgRhMatLnkLaDlynciVLvtNQVaa
============================================================================
A SULFOLOBUS_SOLFATARICUS           la----VRQQ--kLNKhLhQLtrLaEvydiaVIitNQVma
A Desulfurococcus_amylolyticus      la----eRQQ--kLNshLhQLmrLaEaynvaVVvtNQVma
A Sulfolobus_acidocaldarius         la----VRQQ--kLNKhLhQLvrLaEmydiaVIitNQVma
A Sulfolobus_tokodaii               la----VRQQ--kLNKhLhQLvrLaEmydlaVIitNQVma
A Aeropyrum_pernix-RADA             la----MRQQ--lLNRhLhQLmrLaDifnvaVVitNQVma
A Aeropyrum_pernix-RADA_VAR_OH1     la----MRQQ--lLNRhLhQLmrLaDifnvaVVitNQVma
A Aeropyrum_pernix-RADA_VAR_OH2     la----MRQQ--lLNRhLhQLmrLaDifnvaVVitNQVma
A Aeropyrum_pernix-RADA_VAR_OH3     la----MRQQ--lLNRhLhQLmrLaDifnvaVVitNQVma
A Aeropyrum_pernix-RADA_VAR_TB1     la----MRQQ--lLNRhLhQLmrLaDifnvaVVitNQVma
A Aeropyrum_pernix-RADA_VAR_TB2     la----MRQQ--lLNRhLhQLmrLaDifnvaVVitNQVma
A Aeropyrum_pernix-RADA_VAR_TB6     la----MRQQ--lLNRhLhQLmrLaDifnvaVVitNQVma
============================================================================
* HUMAN                             GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* S_CEREVISIAE                      GElS--aRQm--hLaKfMRaLqrLaDQfgvaVVvtNQVva
* Apis_mellifera                    GEla--aRQm--hLgRfLRmLlrLaDEhgvaVVitNQVva
* Aspergillus_flavus                GElS--tRQt--hLaKfMRtLqrLaDEfgiaVVitNQVva
* Aspergillus_fumigatus             GElS--sRQt--hLaKfMRtLqrLaDEfgiaVVitNQVva
* Bovine                            GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* C_elegans                         GDla--eRQm--kLSafLKcLakLaDEygvaVIitNQVva
* Candida_albicans                  GElS--aRQt--hVaKfMRtLqrLaDEfgiaVVitNQVva
* Candida_glabrata                  GElS--aRQm--hLaKfMRaLqrLaDQfgvaVVvtNQVva
* Canis_lupus                       GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* Chaetomium_globosum               GElN--sRQt--hLaKfLRtLqrLaDEfgiaVVitNQVva
* Coccidioides_immitis              GElS--sRQt--hLaRfMRtLqrLaDEfgvaVVitNQVva
* Coprinus_cinereus                 GElS--sRQt--hLgKfLRtLqrLaDEfgiaVVvtNQVms
* Cricetulus_griseus                GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* Cryptococcus_neoformans           GElS--aRQm--hLaKfLRtLmrLaDEfgvaVVvtNQVva
* Danio_rerio                       GElS--aRQg--hLgRfLRmLlrLaDEfgvaVVitNQVva
* Debaryomyces_hansenii             aElS--aRQt--hVaKyMRtLqrLaDEfgiaVVitNQVva
* D_melanogaster                    GEla--aRQn--hLglfLRmLqrLaDEfgvaVVitNQVta
* D_pseudoobscura                   GEla--aRQn--hLglcMRQLqrLaDEfgvaVVitNQVta
* Emericella_nidulans               GElS--tRQt--hLaKfMRtLqrLaDEfgiaVVitNQVva
* Encephalitozoon_cuniculi          GElg--aRQl--hLaKyLRsLvnLaEtfriaVIitNQVvs
* Eremothecium_gossypii             GElS--aRQm--hLaKfMRaLqrLaDQfgvaVVvtNQVva
* Chicken                           GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* Gibberella_zeae                   GElS--nRQt--hLaKfMRtLqrLaDEfgiaVVitNQVva
* Kluyveromyces_lactis              GElS--aRQm--hLaKfMRsLqrLaDQfgvaaVvtNQVva
* Mouse                             GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* Neurospora_crassa                 GElS--sRQt--hLaKfMRtLqrLaDEfgiaVVitNQVva
* Rabbit                            GElS--aRQm--hLaRfLRmLlrLaDEfgvtVVitNQVva
* Pichia_angusta                    GElS--aRQm--hVaKfMRtLqrLaDEfgiaVVitNQVva
* Rat                               GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* Schizosaccharomyces_pombe         GElS--aRQm--hLaRfMRtLqrLaDEfgiaVVitNQVva
* Strongylocentrotus_purpuratus     GEla--sRQm--hLgRfLRtLlrLaDEygvaVVitNQVva
* Tetraodon_nigroviridis            rrcg--dnQsgggtgRrgRhVfrrsQEthwrqhsgSRfyh
* Tribolium_castaneum               GElS--aRQn--hLaRfLRmLlrLaDEfgvaVVltNQVva
* Ustilago_maydis                   GElS--aRQm--hLaKfLRgLmrLaDEfgvaVVitNQVva
* X_tropicalis                      GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* Yarrowia_lipolytica               GElS--aRQt--hVaKfMRtLqrLaDEfgiaVVitNQVva
* X_laevis-RA51A                    GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
* X_laevis-RA51B                    GElS--aRQm--hLaRfLRmLlrLaDEfgvaVVitNQVva
  Cryptosporidium_hominis           GEla--tRQs--hLgQfLRaLqkIaDtfgvaVVitNQVms
  Cryptosporidium_parvum            GEla--tRQs--hLgQfLRaLqkIaDtfgvaVVitNQVms
  Dictyostelium_discoideum          GEla--dRQK--hLaRfLRtLqrLaDEfgvaVVitNQVva
  Entamoeba_histolytica             GEla--sRQm--hLaKfLRaLqrIaDEfsvaVVltNQVva
  Leishmania_donovani               nEla--aRQm--hLgKfLRsLhnLaEEygvaVVvtNQVva
  Leishmania_tropica                nEla--aRQm--hLgKfLRsLhnLaEEygvaVVvtNQVva
  Plasmodium_berghei                GEla--nRQs--hLcRfLRgLqrIaDiygvaVIitNQVva
  Plasmodium_falciparum             GEla--nRQs--hLcRfLRgLqrIaDiygvaVIitNQVva
  Tetrahymena_thermophila           GElS--VRQn--hLgKfLRnLqrLaDEfgiaVVitNQVms
  Theileria_annulata                GEla--sRQm--hLcKfLRaLqrIaDtfgvaVVitNQVva
  Theileria_parva                   GEla--sRQm--hLcKfLRaLqrIaDtfgvaVVitNQVva
  Trypanosoma_brucei                GEla--aRQm--hLgKfLRsLrnLanEynvaVVvtNQVva
  Trypanosoma_cruzi                 nEla--aRQm--hLgKfLRsLhnLaEEygvaVVvtNQVva
P Arabidopsis_thaliana              GElS--aRQm--hLaKfLRsLqkLaDEfgvaVVitNQVva
P Oryza_sativa                      GElS--aRQm--hMaKfLRsLqkLaDEfgvaVVitNQVva
P Maize-R51A1                       GElS--aRQm--hMaKfLRsLqkLaDEfgvaVVitNQVva
P Maize-R51A2                       GElS--aRQm--hLaKfLRsLqkLaDEfgvaVVitNQVva
============================================================================
B E_COLI                            GDsHmgLaaR--mMSQaMRKLagnlKQsntlLIfiNQIrm
B MYCOBACTERIUM_SMEGMATIS           GDsHvgLQaR--lMSQaLRKMtgalnnsgttaIfiNQLre
B MYCOBACTERIUM_TUBERCULOSIS        GDsHvgLQaR--lMSQaLRKMtgalnnsgttaIfiNQLre
B Acinetobacter_calcoaceticus       GDsHmgLQaR--lMSQaLRKItgnaKRsncmVIfiNQIrm
B Actinobacillus_pleuropneumoniae   GDsHmgLQaR--lMSQaLRKLtaniKatnclVVfiNQIrm
B Actinobacillus_succinogenes       GDaHvgLQaR--lMSQaLRKLtaqiKssnclVVfiNQIrm
B Actinomyces_bovis                 GDsHvgLQaR--lMSQaLRKMtsalnnsgttaIfiNQLre
B Azotobacter_vinelandii            GDqHvgLQaR--lMSQaLRKItgniQnanclVIfiNQIrm
B Bacillus_clausii                  GDsHvgLQaR--lMSQaLRKLsgainKsktiaIfiNQIre
B Bacillus_halodurans               GDsHvgLQaR--lMSQaLRKLsgainKsktiaIfiNQIre
B Bacillus_licheniformis            GDsHvgLQaR--lMSQaLRKLsgainKsktiaIfiNQIre
B Bacillus_megaterium               GDsHvgLQaR--lMSQaLRKLsgainKsktiaIfiNQIre
B Bacillus_subtilis                 GDsHvgLQaR--lMSQaLRKLsgainKsktiaIfiNQIre
B Bordetella_pertussis              GDslpgLQaR--lMSQaLRKLtatiKRtncmVIfiNQIrm
B Burkholderia_fungorum             GDslpgLQaR--lMSQaLRKLtgtiKRtnclVIfiNQIrm
B Chromobacterium_violaceum         GDsHvgLQaR--lMSQaLRKLtgniKRtntlVIfiNQIrm
B Clostridium_acetobutylicum        GDsHvgLQaR--lMSQaLRKLtgsinKskciaIfiNQLre
B Clostridium_thermocellum          GDsHvgLQaR--lMSQaLRKLagVinKsrttaIfiNQLre
B Colwellia_psychrerythraea         GDsHmgLQaR--mLSQaMRKLtgnlKKsntmLIfiNQIrm
B Corynebacterium_efficiens         GDsHvgLQaR--lMSQaLRKMtgalynsgttaIfiNQLre
B Desulfotalea_psychrophila         GDvHvgLQaR--lMSQaMRKfagVlnRsntvLIfiNQIrm
B Enterococcus_faecalis             GasHvgLQaR--lMSQaLRKLsgsinKtktiaIfiNQIre
B Haemophilus_ducreyi               GDsymgLQaR--lMSQaLRKLtaniKatnclVVfiNQIrm
B Haemophilus_influenzae            GDsHmgLQaR--lMSQaLRKLtgqiKnanclVVfiNQIrm
B Histophilus_somni                 GDtHvgLQaR--lMSQaLRKLtgqiKnsnclVVfiNQIrm
B Kineococcus_radiotolerans         GDsHvgLQaR--lMSQaLRKItgalnhsgttaIfiNQLre
B Leifsonia_xyli                    GDaHvgLQaR--lMSQaLRKLtgalsQtnttMIfiNQLre
B Mannheimia_succiniciproducens     GDsHvgLQaR--lMSQaLRKLtgqiKnanclVVfiNQIrm
B Nitrosomonas_europaea             GEpqmgLQaR--lMSQaLRKLtaniKRtntmVIfiNQIrm
B Nitrosomonas_eutropha             GEpqmgLQaR--lMSQaLRKLtaniKRtnttVIfiNQIrm
B Oceanobacillus_iheyensis          GDsHvgLQaR--lMSQaLRKLsgainKskttaIfiNQIre
B Pasteurella_multocida             GDsHmgLQaR--lMSQaLRKLtgqiKnsnclVVfiNQIrm
B Photobacterium_profundum          GDsHmgLQaR--mLSQaMRKLtgnlKQsncmcIfiNQIrm
B Photorhabdus_luminescens          GDsHmgLaaR--mMSQaMRKLagnlKssntlLIfiNQIrm
B Proteus_mirabilis                 GDsHvgLaaR--mMSQaMRKLagnlKnsntlLIfiNQIrm
B Pseudomonas_cepacia               GDslpgLQaR--lMSQaLRKLtgtiKRtnclVIfiNQIrm
B Pseudomonas_pseudomallei          GDalpgLQaR--lMSQaLRKLtgtiKRtnclVIfiNQIrm
B Shewanella_amazonensis            GDsHvgLaaR--mMSQaMRKLagnlKQsntlLIfiNQIrm
B Shewanella_putrefaciens           GDsHmgLaaR--mMSQaMRKLagnlKQsntlLIfiNQIrm
B Streptomyces_avermitilis          GDsHvgLQaR--lMSQaLRKItsalnQskttaIfiNQLre
B Vibrio_alginolyticus              GDsHmgLQaR--mLSQaMRKLtgnlKQsncmcIfiNQIrm
B Vibrio_angustum                   GDsHmgLQaR--mLSQaMRKLtgnlKQsncmcIfiNQIrm
B Vibrio_cholerae                   GDsHmgLQaR--mLSQaMRKLtgnlKQsncmcIfiNQIrm
B Vibrio_fischeri                   GDsHmgLQaR--mLSQaMRKLtgnlKQsncmaIfiNQIrm
B Vibrio_parahaemolyticus           GDsHmgLQaR--mLSQaMRKLtgnlKQsncmcIfiNQIrm
B Vibrio_splendidus                 GDsHmgLQaR--mLSQaMRKLtgnlKQsncmaIfiNQIrm
B Vibrio_vulnificus                 GDsHmgLQaR--mLSQaMRKLtgnlKQsncmcIfiNQIrm
B Yersinia_enterocolitica           GDsHmgLaaR--mMSQaMRKLagnlKnantlLIfiNQIrm
B Cupriavidus_metallidurans-Q1LR74  GDslpgLQaR--lMSQaLRKLtgtiKRtnclVIfiNQIrm
B Cupriavidus_metallidurans-RECA    GDslpgLQaR--lMSQgLRKLtgtiKRtnclVIfiNQIrm
B Erwinia_carotovora-RECA           GDsHvgLaaR--mMSQaMRKLagnlKnsntlLIfiNQIrm
B Erwinia_carotovora-RECA_ERWCT     GDsHmgLaaR--mMSQaMRKLagnlKQantlLIfiNQIrm
B Listeria_monocytogenes-RECA       GDaHvgLQaR--lMSQaLRKLsgVinKsktiaIfiNQIre
B Listeria_monocytogenes-RECA_LISMF GDaHvgLQaR--lMSQaLRKLsgVinKsktiaIfiNQIre
B Neisseria_gonorrhoeae-RECA        GDsHvgLQaR--lMSQaLRKLtghiKKtntlVVfiNQIrm
B Neisseria_gonorrhoeae-RECA_VAR    GDsHvgLQaR--lMSQaLRKLtghiKKtntlVVfiNQIrm
B Salmonella_typhi-RECA             GDsHmgLaaR--mMSQaMRKLagnlKQsntlLIfiNQIrm
B Salmonella_typhi-RECA_SALPA       GDsHmgLaaR--mMSQaMRKLagnlKQsntlLIfiNQIrm
B Streptomyces_coelicolor-RECA      GDsHvgLQaR--lMSQaLRKItsalnQskttaIfiNQLre
B Streptomyces_coelicolor-RECA_STRL GDsHvgLQaR--lMSQaLRKItsalnQskttaIfiNQLre
B Xylella_fastidiosa-RECA           GDqlpgLQaR--lMSQaLRKLtgniKRsntlVIfiNQLrm
B Xylella_fastidiosa-RECA_XYLFT     GDqlpgLQaR--lMSQaLRKLtgniKRsntlVIfiNQLrm
B Yersinia_pestis-RECA              GDsHmgLaaR--mMSQaMRKLagnlKnantlLIfiNQIrm
B Yersinia_pestis-RECA_YERPS        GDsHmgLaaR--mMSQaMRKLagnlKnantlLIfiNQIrm
B Mycobacterium_tuberculosis-RECA   GDsHvgLQaR--lMSQaLRKMtgalnnsgttaIfiNQLrd
B Mycobacterium_tuberculosis-RECA_M GDsHvgLQaR--lMSQaLRKMtgalnnsgttaIfiNQLre
B Neisseria_meningitidis-RECA       GDsHvgLQaR--lMSQaLRKLtghiKKtntlVVfiNQIrm
B Neisseria_meningitidis-RECA_NEIMA GDsHvgLQaR--lMSQaLRKLtghiKKtntlVVfiNQIrm
B Neisseria_meningitidis-RECA_VAR   GDsHvgLQaR--lMSQaLRKLtghiKKtntlVVfiNQIrm
B Xanthomonas_vasicola-RECA_XANAC   GDqlpgLQaR--lMSQaLRKLtgniKRsntlVVfiNQLrm
B Xanthomonas_vasicola-RECA_XANCP   GDqlpgLQaR--lMSQaLRKLtgniKRsntlVVfiNQLrm
B Xanthomonas_vasicola-YP_201580    GDqlpgLQaR--lMSQaLRKLtgniKRsntlVVfiNQLrm
B Pseudomonas_aeruginosa-Q48F94     GDmHvgLQaR--lMSQaLRKItgniKnanclVIfiNQIrm
B Pseudomonas_aeruginosa-RECA       GDaHvgLQaR--lMSQaLRKItgniKnanclVIfiNQIrm
B Pseudomonas_aeruginosa-RECA_PSEF5 GDmHvgLQaR--lMSQaLRKItgniKnanclVIfiNQIrm
B Pseudomonas_aeruginosa-RECA_PSEFL GDmHvgLQaR--lMSQaLRKItgniKnanclVIfiNQIrm
B Pseudomonas_aeruginosa-RECA_PSEPK GDmHvgLQaR--lMSQaLRKItgniKnanclVIfiNQIrm
B Pseudomonas_aeruginosa-RECA_PSEPU GDmHvgLQaR--lMSQaLRKItgniKnanclVIfiNQIrm
B Pseudomonas_aeruginosa-RECA_PSESM GDmHvgLQaR--lMSQaLRKItgniKnanclVIfiNQIrm
============================================================================
B DEINOCOCCUS_RADIODURANS           GDslpgLQaR--lMSQaLRKLtaIlsKtgtaaIfiNQVre
B Deinococcus_geothermalis          GDslpgLQaR--lMSQaLRKLtaIlsKtgtaaIfiNQVre
B Thermus_aquaticus-RECA            GDqHvgLQaR--lMSQaLRKLtaVlsKsntaaIfiNQVre
B Thermus_aquaticus-RECA_THET2      GDqHvgLQaR--lMSQaLRKLtaVlaKsntaaIfiNQVre
B Thermus_aquaticus-RECA_THET8      GDqHvgLQaR--lMSQaLRKLtaVlaKsntaaIfiNQVre
B Thermus_aquaticus-RECA_THETH      GDqHvgLQaR--lMSQaLRKLtaVlaKsntaaIfiNQVre
============================================================================
  Consensus                         gexnxxmRqqxxxLsQxLRqLxxlxeqxxxxvIxxNqixx

                                           490       500       510       520
                                    ----:----|----:----|----:----|----:----|
  Consensus                         kixvxfgxxsxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               RpdafFGdpTrpigghilahsa------------------
A Archaeoglobus_fulgidus            RpdVlFGdpTkpvgghivahta------------------
A Pyrococcus_abyssi                 RpdafFGdpTrpigghilahsa------------------
============================================================================
A METHANOCOCCUS_VOLTAE              KpdafFGmaeqaigghivghaa------------------
A Methanococcus_jannaschii          RpdalFGpseqaigghivghaa------------------
A Methanococcus_maripaludis         KpdayFGvaeqaigghvvghaa------------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           RpdMfYGdpTvavgghtlyhvp------------------
A Desulfurococcus_amylolyticus      RpdVfYGdpTtavgghvlahtp------------------
A Sulfolobus_acidocaldarius         RpdMfYGdpTtavgghtlyhvp------------------
A Sulfolobus_tokodaii               RpdMfYGdpTvavgghtlyhvp------------------
A Aeropyrum_pernix-RADA             RpdVfYGdpTqavgghvlghap------------------
A Aeropyrum_pernix-RADA_VAR_OH1     RpdVfYGdpTqavgghvlghap------------------
A Aeropyrum_pernix-RADA_VAR_OH2     RpdVfYGdpTqavgghvlghap------------------
A Aeropyrum_pernix-RADA_VAR_OH3     RpdVfYGdpTqavgghvlghap------------------
A Aeropyrum_pernix-RADA_VAR_TB1     RpdVfYGdpTqavgghvlghap------------------
A Aeropyrum_pernix-RADA_VAR_TB2     RpdVfYGdpTqavgghvlghap------------------
A Aeropyrum_pernix-RADA_VAR_TB6     RpdVfYGdpTqavgghvlghap------------------
============================================================================
* HUMAN                             QVd-g--a-a--------------------------m-fa
* S_CEREVISIAE                      QVd-g--g-m--------------------------a-fn
* Apis_mellifera                    QVd-g--a-a--------------------------smfg
* Aspergillus_flavus                QVd-ggps-a--------------------------m-fn
* Aspergillus_fumigatus             QVd-ggps-a--------------------------m-fn
* Bovine                            QVd-g--a-a--------------------------m-fa
* C_elegans                         QVdgg--a-S--------------------------m-fq
* Candida_albicans                  QVd-g-ms-g--------------------------m-fn
* Candida_glabrata                  QVd-g--g-m--------------------------s-fn
* Canis_lupus                       QVd-g--a-a--------------------------m-fa
* Chaetomium_globosum               QVd-ggps-a--------------------------m-fn
* Coccidioides_immitis              QVe-ggps-a--------------------------m-fn
* Coprinus_cinereus                 tpd-a--apg--------------------------p-ya
* Cricetulus_griseus                QVd-g--a-a--------------------------m-ft
* Cryptococcus_neoformans           QVd-g--g-q--------------------------f-av
* Danio_rerio                       QVd-g--a-a--------------------------m-fs
* Debaryomyces_hansenii             QVd-g--asa--------------------------m-fn
* D_melanogaster                    sLd-g--a-p--------------------------g-mf
* D_pseudoobscura                   QLdgg--g-g--------------------------m-fv
* Emericella_nidulans               QVd-ggps-a--------------------------m-fn
* Encephalitozoon_cuniculi          nVd-g--avg--------------------------m-ft
* Eremothecium_gossypii             QVd-g--a-a--------------------------m-fn
* Chicken                           QVd-g--a-a--------------------------m-fa
* Gibberella_zeae                   QVd-ggps-a--------------------------m-fn
* Kluyveromyces_lactis              QVd-g--g-m--------------------------m-fn
* Mouse                             QVd-g--a-a--------------------------m-fa
* Neurospora_crassa                 QVd-ggps-a--------------------------m-fn
* Rabbit                            QVd-g--a-a--------------------------m-fa
* Pichia_angusta                    QVd-g--g-a--------------------------i-fn
* Rat                               QVd-g--a-a--------------------------m-fa
* Schizosaccharomyces_pombe         QVd-g--i-S----------------------------fn
* Strongylocentrotus_purpuratus     QVd-g--a-a--------------------------m-ft
* Tetraodon_nigroviridis            pVs-g--v-f--------------------------k-tc
* Tribolium_castaneum               QVd-g--a-a--------------------------m-fn
* Ustilago_maydis                   QVd-g--a-T--------------------------a-ft
* X_tropicalis                      QVd-g--a-a--------------------------m-fa
* Yarrowia_lipolytica               QVd-g--a-v----------------------------fn
* X_laevis-RA51A                    QVd-g--a-a--------------------------m-fa
* X_laevis-RA51B                    QVd-g--a-a--------------------------m-fa
  Cryptosporidium_hominis           KVd-a--m-a--------------------------a-mf
  Cryptosporidium_parvum            KVd-a--m-a--------------------------a-mf
  Dictyostelium_discoideum          sVd-g--agg--------------------------m-fn
  Entamoeba_histolytica             QVd-g-qa-S--------------------------m-fg
  Leishmania_donovani               nVd-g--saq--------------------------m-fq
  Leishmania_tropica                nVd-g--s-a---------------------q----m-fq
  Plasmodium_berghei                KVd-a--m-S--------------------------m-fg
  Plasmodium_falciparum             KVd-a--m-S--------------------------m-fg
  Tetrahymena_thermophila           QVd-g--a-a--------------------------m-fa
  Theileria_annulata                RVd-a--m-Stffgilllyiiiycyilinickfyidk-fv
  Theileria_parva                   KVd-a--m-S--------------------------t-ff
  Trypanosoma_brucei                nVd-g--a-ap-------------------------t-fq
  Trypanosoma_cruzi                 nVd-g--s-a---------------------q----m-fq
P Arabidopsis_thaliana              QVd-g--s-a--------------------------l-fa
P Oryza_sativa                      QVd-g--s-a--------------------------m-fa
P Maize-R51A1                       QVd-g--s-a--------------------------m-fa
P Maize-R51A2                       QVd-g--a-a--------------------------m-fa
============================================================================
B E_COLI                            KIgVmFG--Npetttggnalkfya----------------
B MYCOBACTERIUM_SMEGMATIS           KIgVmFG--Spetttggkalkfya----------------
B MYCOBACTERIUM_TUBERCULOSIS        KIgVmFG--Spetttggkalkfya----------------
B Acinetobacter_calcoaceticus       KIgVmFG--Spetttggnalkfya----------------
B Actinobacillus_pleuropneumoniae   KIgVmFG--Npetttggnalkfya----------------
B Actinobacillus_succinogenes       KIgVmFG--Npetttggnalkfys----------------
B Actinomyces_bovis                 KIgVmFG--Spetttggkalkfya----------------
B Azotobacter_vinelandii            KIgVmFG--Npetttganalkfya----------------
B Bacillus_clausii                  KVgVmFG--Npettpggralkfys----------------
B Bacillus_halodurans               KVgVmFG--Npettpggralkfys----------------
B Bacillus_licheniformis            KVgVmFG--Npettpggralkfys----------------
B Bacillus_megaterium               KVgVmFG--Npettpggralkfys----------------
B Bacillus_subtilis                 KVgVmFG--Npettpggralkfys----------------
B Bordetella_pertussis              KIgVmFG--Npetttggnalkfys----------------
B Burkholderia_fungorum             KIgVmFG--Npetttggnalkfya----------------
B Chromobacterium_violaceum         KIgVmFG--Npetttggnalkfya----------------
B Clostridium_acetobutylicum        KVgImFG--Npettpggralkfya----------------
B Clostridium_thermocellum          KVgVmFG--Npettpggralkfya----------------
B Colwellia_psychrerythraea         KIgVmFG--Spetttggnalkfya----------------
B Corynebacterium_efficiens         KIgVmFG--Spetttggkalkfya----------------
B Desulfotalea_psychrophila         KIgVmFG--Spetttggnalkfyc----------------
B Enterococcus_faecalis             KVgVmFG--Npettpggralkfya----------------
B Haemophilus_ducreyi               KIgVmFG--Npetttggnalkfya----------------
B Haemophilus_influenzae            KIgVmFG--Npetttggnalkfys----------------
B Histophilus_somni                 KIgViFG--Npetttggnalkfya----------------
B Kineococcus_radiotolerans         KIgVmFG--Spetttggkalkfya----------------
B Leifsonia_xyli                    KVgVfFG--Spettaggkalkfya----------------
B Mannheimia_succiniciproducens     KIgVmFG--Npetttggnalkfys----------------
B Nitrosomonas_europaea             KIgViFG--Npetttggnalkfya----------------
B Nitrosomonas_eutropha             KIgVmFG--Npetttggnalkfya----------------
B Oceanobacillus_iheyensis          KVgVmFG--Npettpggralkfys----------------
B Pasteurella_multocida             KIgVmFG--Npetttggnalkfya----------------
B Photobacterium_profundum          KIgVmFG--Npetttggnalkfya----------------
B Photorhabdus_luminescens          KIgVmFG--Npetttggnalkfya----------------
B Proteus_mirabilis                 KIgVmFG--Npetttggnalkfya----------------
B Pseudomonas_cepacia               KIgVmFG--Npetttggnalkfys----------------
B Pseudomonas_pseudomallei          KIgVmFG--Npetttggnalkfys----------------
B Shewanella_amazonensis            KIgVmFG--Npetttggnalkfya----------------
B Shewanella_putrefaciens           KIgVmFG--Npetttggnalkfya----------------
B Streptomyces_avermitilis          KIgVmFG--Spetttggralkfya----------------
B Vibrio_alginolyticus              KIgVmFG--Npetttggnalkfya----------------
B Vibrio_angustum                   KIgVmFG--Npetttggnalkfya----------------
B Vibrio_cholerae                   KIgVmFG--Npetttggnalkfya----------------
B Vibrio_fischeri                   KIgVmFG--Npetttggnalkfya----------------
B Vibrio_parahaemolyticus           KIgVmFG--Npetttggnalkfya----------------
B Vibrio_splendidus                 KIgVmFG--Npetttggnalkfya----------------
B Vibrio_vulnificus                 KIgVmFG--Npetttggnalkfya----------------
B Yersinia_enterocolitica           KIgVmFG--Npetttggnalkfya----------------
B Cupriavidus_metallidurans-Q1LR74  KIgVmFG--Spetttggnalkfya----------------
B Cupriavidus_metallidurans-RECA    KIgVmFG--Spetttggnalkfya----------------
B Erwinia_carotovora-RECA           KIgVmFG--Npetttggnalkfya----------------
B Erwinia_carotovora-RECA_ERWCT     KIgVmFG--Npetttggnalkfya----------------
B Listeria_monocytogenes-RECA       KVgVmFG--Npeitpggralkfys----------------
B Listeria_monocytogenes-RECA_LISMF KVgVmFG--Npeitpggralkfys----------------
B Neisseria_gonorrhoeae-RECA        KIgVmFG--Spetttggnalkfys----------------
B Neisseria_gonorrhoeae-RECA_VAR    KIgVmFG--Spetttggnalkfys----------------
B Salmonella_typhi-RECA             KIgVmFG--Npetttggnalkfya----------------
B Salmonella_typhi-RECA_SALPA       KIgVmFG--Npetttggnalkfya----------------
B Streptomyces_coelicolor-RECA      KIgVmFG--Spetttggralkfya----------------
B Streptomyces_coelicolor-RECA_STRL KIgVmFG--Spetttggralkfya----------------
B Xylella_fastidiosa-RECA           KIgVmmpgqSpetttggnalkfya----------------
B Xylella_fastidiosa-RECA_XYLFT     KIgImmpgqSpetttggnalkfya----------------
B Yersinia_pestis-RECA              KIgVmFG--Npetttggnalkfya----------------
B Yersinia_pestis-RECA_YERPS        KIgVmFG--Npetttggnalkfya----------------
B Mycobacterium_tuberculosis-RECA   KIgVmFG--Spetttggkalkfya----------------
B Mycobacterium_tuberculosis-RECA_M KIgVmFG--Spetttggkalkfya----------------
B Neisseria_meningitidis-RECA       KIgVmFG--Spetttggnalkfys----------------
B Neisseria_meningitidis-RECA_NEIMA KIgVmFG--Spetttggnalkfys----------------
B Neisseria_meningitidis-RECA_VAR   KIgVmFG--Spetttggnalkfys----------------
B Xanthomonas_vasicola-RECA_XANAC   KIgVmmpgqSpevttggnalkfya----------------
B Xanthomonas_vasicola-RECA_XANCP   KIgVmmpgqSpevttggnalkfya----------------
B Xanthomonas_vasicola-YP_201580    KIgVmmpgqSpevttggnalkfya----------------
B Pseudomonas_aeruginosa-Q48F94     KIgVmFG--Spetttggnalkfya----------------
B Pseudomonas_aeruginosa-RECA       KIgVmFG--Npetttggnalkfya----------------
B Pseudomonas_aeruginosa-RECA_PSEF5 KIgVmFG--Spetttggnalkfya----------------
B Pseudomonas_aeruginosa-RECA_PSEFL KIgVmFG--Spetttggnalkfya----------------
B Pseudomonas_aeruginosa-RECA_PSEPK KIgVmFG--Spetttggnalkfya----------------
B Pseudomonas_aeruginosa-RECA_PSEPU KIgVmFG--Spetttggnalkfya----------------
B Pseudomonas_aeruginosa-RECA_PSESM KIgVmFG--Spetttggnalkfya----------------
============================================================================
B DEINOCOCCUS_RADIODURANS           KIgVmYGnpetttggralkfya------------------
B Deinococcus_geothermalis          KIgVmYGnpetttggralkfya------------------
B Thermus_aquaticus-RECA            KVgVmYGnpettpggralkfys------------------
B Thermus_aquaticus-RECA_THET2      KVgVtYGnpettpggralkfya------------------
B Thermus_aquaticus-RECA_THET8      KVgVtYGnpettpggralkfya------------------
B Thermus_aquaticus-RECA_THETH      KVgVtYGnpettpggralkfya------------------
============================================================================
  Consensus                         kixvxfgxxsxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                                           530       540       550       560
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxSlRLnLKKxqxxxxxxxxxxxdqr
============================================================================
A PYROCOCCUS_FURIOSUS               ----------------TLRVyLRKgKg----------gKR
A Archaeoglobus_fulgidus            ----------------TfRIyLKKgKd----------DlR
A Pyrococcus_abyssi                 ----------------TLRVyLRKgKg----------gKR
============================================================================
A METHANOCOCCUS_VOLTAE              ----------------TfRffVRKgKg----------DKR
A Methanococcus_jannaschii          ----------------TfRIfLRKaKg----------DKR
A Methanococcus_maripaludis         ----------------TfRffLRKsKg----------DKR
============================================================================
A SULFOLOBUS_SOLFATARICUS           ----------------gIRIqLKKsRg----------NRR
A Desulfurococcus_amylolyticus      ----------------gVRIqLRKsKg----------NKR
A Sulfolobus_acidocaldarius         ----------------gIRVqLKKsRg----------NKR
A Sulfolobus_tokodaii               ----------------gIRVqLKKsRg----------NKR
A Aeropyrum_pernix-RADA             ----------------gVRVyLKKsRg----------NKR
A Aeropyrum_pernix-RADA_VAR_OH1     ----------------gVRVyLKKsRg----------NKR
A Aeropyrum_pernix-RADA_VAR_OH2     ----------------gVRVyLKKsRg----------NKR
A Aeropyrum_pernix-RADA_VAR_OH3     ----------------gVRVyLKKsRg----------DKR
A Aeropyrum_pernix-RADA_VAR_TB1     ----------------gVRVyLKKgRg----------NKR
A Aeropyrum_pernix-RADA_VAR_TB2     ----------------gVRVyLKKsRg----------sKR
A Aeropyrum_pernix-RADA_VAR_TB6     ----------------gVRVyLKKsRg----------NKR
============================================================================
* HUMAN                             adpkkpiggniiahasTtRLyLRKgRg----------EtR
* S_CEREVISIAE                      pdpkkptggnimahssTtRLgfKKgKg----------cQR
* Apis_mellifera                    gdqkkpigghiiahasTtRLyLRKgRg----------EtR
* Aspergillus_flavus                pdpkkpiggniiahasTtRLSLKKgRg----------EtR
* Aspergillus_fumigatus             pdpkkpiggniiahasTtRLSLKKgRg----------EtR
* Bovine                            adpkkpiggniiahasTtRLyLRKgRg----------EtR
* C_elegans                         adakkpigghiiahmsTtRLyLRKgKg----------EnR
* Candida_albicans                  pdpkkpiggniiahssTtRLSfKKgRg----------EtR
* Candida_glabrata                  pdpkkpiggnimahssTtRLgfKKgKg----------cQR
* Canis_lupus                       adpkkpiggniiahasTtRLyLRKgRg----------EtR
* Chaetomium_globosum               pdpkkpiggnimahssTtRISLKKgRg----------EtR
* Coccidioides_immitis              pdpkkpiggniiahasTtRLSLKKgRg----------EtR
* Coprinus_cinereus                 gnekkpiggnimahasTtRLqLKKgRg----------NtR
* Cricetulus_griseus                adpkkpiggniiahasTtRLyLRKgRg----------EtR
* Cryptococcus_neoformans           adakkpiggnimahasTtRLNLRKgRg----------tsR
* Danio_rerio                       adpkkpiggnilahasTtRLyLRKgRg----------EtR
* Debaryomyces_hansenii             pdpkkpiggniiahssTtRLSfKKgRa----------EQR
* D_melanogaster                    -dakkpigghimahssTtRLyLRKgKg----------EtR
* D_pseudoobscura                   adakkpvgghilahasTtRLyLRKgKg----------EtR
* Emericella_nidulans               pdpkkpiggniiahasTtRLSLKKgRg----------EtR
* Encephalitozoon_cuniculi          gdikkpiggnimahasTtRLyLRKgRg----------EtR
* Eremothecium_gossypii             pdpkkpiggnimahssTtRLgfKKgKg----------cQR
* Chicken                           adpkkpiggniiahasTtRLyLRKgRg----------EtR
* Gibberella_zeae                   pdpkkpiggniiahasTtRISLKKgRa----------EtR
* Kluyveromyces_lactis              pdpkkpfggnimahssTtRLgfKKgKg----------pQR
* Mouse                             adpkkpiggniiahasTtRLyLRKgRg----------EtR
* Neurospora_crassa                 pdpkkpiggniiahasTtRISLKKgRg----------EtR
* Rabbit                            adpkkpiggniiahasTtRLyLRKgRg----------EtR
* Pichia_angusta                    pdpkkpiggnivahssTtRLyfKKaKg----------anR
* Rat                               adpkkpiggniiahasTtRLyLRKgRg----------EtR
* Schizosaccharomyces_pombe         pdpkkpiggnilahssTtRLSLRKgRg----------EQR
* Strongylocentrotus_purpuratus     sdpkkpigghimahasTtRLyLRKgRg----------EtR
* Tetraodon_nigroviridis            gygiteetsefvqlvlfavctLRKgRg----------EtR
* Tribolium_castaneum               adpkkpiggnimahssTtRLSLRKgRg----------EaR
* Ustilago_maydis                   adakkpiggnivahasTtRLSLRKgRg----------NQR
* X_tropicalis                      adpkkpiggniiahasTtRLyLRKgRg----------EtR
* Yarrowia_lipolytica               pdpkkpiggnivahasTtRLyfKKgRg----------vQR
* X_laevis-RA51A                    adpkkpiggniiahasTtRLyLRKgRg----------EtR
* X_laevis-RA51B                    adpkkpiggniiahasTtRLyLRKgRg----------EtR
  Cryptosporidium_hominis           qndkvpiggniiahasqtRLfLKKgRg----------EtR
  Cryptosporidium_parvum            qndkvpiggniiahasqtRLfLKKgRg----------EtR
  Dictyostelium_discoideum          pdpkkpigghimahssTtRLSLRKgKg----------EmR
  Entamoeba_histolytica             gdtkkpvggniiahasTtRLyLRKgKg----------EaR
  Leishmania_donovani               adskkpigghimahasTtRLSLRKgRg----------EQR
  Leishmania_tropica                adskkpigghimahasTtRLSLRKgRg----------EQR
  Plasmodium_berghei                ghekipiggniiahasqtRLyLRKgRg----------EsR
  Plasmodium_falciparum             ghekipiggniiahasqtRLyLRKgRg----------EsR
  Tetrahymena_thermophila           gdmkkpiggnimahasTtRLyLRKgRg----------EsR
  Theileria_annulata                gndklpvgghiiahasqtRLfLRQsKg----------EsR
  Theileria_parva                   gndklpvgghiiahasqtRLfLRQsKg----------EsR
  Trypanosoma_brucei                adskkpigghimahasTtRLSLRKgRg----------EQR
  Trypanosoma_cruzi                 adakkpigghimahasTtRLSLRKgRg----------EQR
P Arabidopsis_thaliana              gpqfkpiggnimahatTtRLaLRKgRa----------EER
P Oryza_sativa                      gpqikpiggnimahasTtRLaLRKgRg----------EER
P Maize-R51A1                       gpqfkpiggnimahasTtRLaLRKgRg----------EER
P Maize-R51A2                       gpqikpiggnimahasTtRLfLRKgRg----------EER
============================================================================
B E_COLI                            ----------------SVRLDIRRigavkegenvvg-sEt
B MYCOBACTERIUM_SMEGMATIS           ----------------SVRLDVRRiEtlkdgtdavg-NRt
B MYCOBACTERIUM_TUBERCULOSIS        ----------------SVRMDVRRiEtlkdgtnavg-NRt
B Acinetobacter_calcoaceticus       ----------------SVRLDIRRigqvkegdeiig-sEt
B Actinobacillus_pleuropneumoniae   ----------------SVRLDIRRsgvvkdgdevvg-sEt
B Actinobacillus_succinogenes       ----------------SVRLDIRRigsvkagdeiig-NEt
B Actinomyces_bovis                 ----------------SVRLDVRRiEtlkdgsdavg-NRt
B Azotobacter_vinelandii            ----------------SVRLDIRRtgavkesdevig-sEt
B Bacillus_clausii                  ----------------SVRLeVRRaEalkqgneivg-NRt
B Bacillus_halodurans               ----------------SVRLeVRRaEtlkqgndmvg-NKt
B Bacillus_licheniformis            ----------------SVRLeVRRaEqlkqgndvmg-NKt
B Bacillus_megaterium               ----------------SVRLeVRRaEqlkqgndivg-NKt
B Bacillus_subtilis                 ----------------SVRLeVRRaEqlkqgndvmg-NKt
B Bordetella_pertussis              ----------------SVRLDIRRigaikkgdevvg-NEt
B Burkholderia_fungorum             ----------------SVRLDIRRigsikkndevig-NEt
B Chromobacterium_violaceum         ----------------SVRLDIRRtggikkgdevig-Ndt
B Clostridium_acetobutylicum        ----------------SVRMDIRKidtikqgeemig-NRv
B Clostridium_thermocellum          ----------------SVRLDVRRlEsikqgnevig-sRt
B Colwellia_psychrerythraea         ----------------SVRLDIRRigavkngdeivg-NEt
B Corynebacterium_efficiens         ----------------SVRIDVRRiQtlkdgqdaig-NRt
B Desulfotalea_psychrophila         ----------------SeRLDIRRigaikdgqeitg-NRt
B Enterococcus_faecalis             ----------------TVRLeVRRaEqlkqgtdivg-NRt
B Haemophilus_ducreyi               ----------------SVRLDIRRsgvvkdgdevvg-sEt
B Haemophilus_influenzae            ----------------SVRLDIRRtgsvkdgeniig-NEt
B Histophilus_somni                 ----------------SVRLDIRRvgsikngdevig-NEt
B Kineococcus_radiotolerans         ----------------SVRLDVRRiEtlkdgtnpvg-NRt
B Leifsonia_xyli                    ----------------SVRLDIRRiEtlkdgtdavg-NRt
B Mannheimia_succiniciproducens     ----------------SVRLDIRRvgavkdgdeiig-NEt
B Nitrosomonas_europaea             ----------------SVRLDIRRtgsikrgeemvg-NEt
B Nitrosomonas_eutropha             ----------------SVRLDIRRtgsikrgeeivg-NEt
B Oceanobacillus_iheyensis          ----------------SVRLeVRRaEtlklgndavg-NKa
B Pasteurella_multocida             ----------------SVRLDIRRtgaikegeevig-NEt
B Photobacterium_profundum          ----------------SVRLDIRRtgaikdgdevvg-NEt
B Photorhabdus_luminescens          ----------------SVRLDIRRigsvkngeevvg-sEt
B Proteus_mirabilis                 ----------------SVRLDIRRigsvkngdevig-sEt
B Pseudomonas_cepacia               ----------------SVRLDIRRigsikkndevig-NEt
B Pseudomonas_pseudomallei          ----------------SVRLDIRRigsikkndevig-NEt
B Shewanella_amazonensis            ----------------SVRLDIRRtgaikegdevvg-NEt
B Shewanella_putrefaciens           ----------------SVRLDIRRtgaikegdevvg-NEt
B Streptomyces_avermitilis          ----------------SVRLDIRRiEtlkdgtdavg-NRt
B Vibrio_alginolyticus              ----------------SVRLDIRRtgaikegdevvg-NEt
B Vibrio_angustum                   ----------------SVRLDIRRtgaikegdevvg-NEt
B Vibrio_cholerae                   ----------------SVRLDIRRtgaikegeevvg-NEt
B Vibrio_fischeri                   ----------------SVRLDIRRtgavkdgdevvg-NEt
B Vibrio_parahaemolyticus           ----------------SVRLDIRRtgaikegdevvg-NEt
B Vibrio_splendidus                 ----------------SVRLDIRRtgaikdgdevvg-NEt
B Vibrio_vulnificus                 ----------------SVRLDIRRtgaikegdevvg-NEt
B Yersinia_enterocolitica           ----------------SVRLDIRRigavkdgdvvvg-sEt
B Cupriavidus_metallidurans-Q1LR74  ----------------SVRLDIRRigsikkgdevvg-NEt
B Cupriavidus_metallidurans-RECA    ----------------SVRLDIRRigsikkgdevvg-NEt
B Erwinia_carotovora-RECA           ----------------SVRLDIRRigsvkngdevvg-sEt
B Erwinia_carotovora-RECA_ERWCT     ----------------SVRLDIRRtgaikegeevvg-sEt
B Listeria_monocytogenes-RECA       ----------------TVRLeVRRaEqlkqgtdvmg-NKt
B Listeria_monocytogenes-RECA_LISMF ----------------TVRLeVRRaEqlkqgtdvmg-NKt
B Neisseria_gonorrhoeae-RECA        ----------------SVRLDIRRtgsikkgeevlg-NEt
B Neisseria_gonorrhoeae-RECA_VAR    ----------------SVRLDIRRtgsikkgeevlg-NEt
B Salmonella_typhi-RECA             ----------------SVRLDIRRigavkegdnvvg-sEt
B Salmonella_typhi-RECA_SALPA       ----------------SVRLDIRRigavkegdnvvg-sEt
B Streptomyces_coelicolor-RECA      ----------------SVRLDIRRiEtlkdgtdavg-NRt
B Streptomyces_coelicolor-RECA_STRL ----------------SVRLDIRRiEtlkdgtdavg-NRt
B Xylella_fastidiosa-RECA           ----------------SVRLDIRRigaikkgdeiig-NQt
B Xylella_fastidiosa-RECA_XYLFT     ----------------SVRLDIRRigaikkgdeiig-NQt
B Yersinia_pestis-RECA              ----------------SVRLDIRRigavkdgdvvvg-sEt
B Yersinia_pestis-RECA_YERPS        ----------------SVRLDIRRigavkdgdvvvg-sEt
B Mycobacterium_tuberculosis-RECA   ----------------SVRMDVRRvEtlkdgtnavg-NRt
B Mycobacterium_tuberculosis-RECA_M ----------------SVRMDVRRiEtlkdgtnavg-NRt
B Neisseria_meningitidis-RECA       ----------------SVRLDIRRtgsikkgeevlg-NEt
B Neisseria_meningitidis-RECA_NEIMA ----------------SVRLDIRRtgsikkgeevlg-NEt
B Neisseria_meningitidis-RECA_VAR   ----------------SVRLDIRRtgsikkgeevlg-NEt
B Xanthomonas_vasicola-RECA_XANAC   ----------------SVRLDIRRigaikkgdeiig-NQt
B Xanthomonas_vasicola-RECA_XANCP   ----------------SVRLDIRRigaikkgdeiig-NQt
B Xanthomonas_vasicola-YP_201580    ----------------SVRLDIRRigaikkgdeiig-NQt
B Pseudomonas_aeruginosa-Q48F94     ----------------SVRLDIRRtgavkegdevvg-sEt
B Pseudomonas_aeruginosa-RECA       ----------------SVRLDIRRtgavkegdevvg-sEt
B Pseudomonas_aeruginosa-RECA_PSEF5 ----------------SVRLDIRRtgavkegdevvg-sEt
B Pseudomonas_aeruginosa-RECA_PSEFL ----------------SVRLDIRRtgavkegdevvg-sEt
B Pseudomonas_aeruginosa-RECA_PSEPK ----------------SVRLDIRRtgavkegdevvg-sEt
B Pseudomonas_aeruginosa-RECA_PSEPU ----------------SVRLDIRRtgavkegdevvg-sEt
B Pseudomonas_aeruginosa-RECA_PSESM ----------------SVRLDIRRtgavkegdevvg-sEt
============================================================================
B DEINOCOCCUS_RADIODURANS           ----------------SVRLDVRKigqptkvgndavaNtv
B Deinococcus_geothermalis          ----------------SVRLDVRKigqpvklgndavgNtv
B Thermus_aquaticus-RECA            ----------------SVRLDVRKsgqpikvgneavgiKv
B Thermus_aquaticus-RECA_THET2      ----------------SVRLDVRKsgqpikvgneavgvKv
B Thermus_aquaticus-RECA_THET8      ----------------SVRLDVRKsgqpikvgneavgvKv
B Thermus_aquaticus-RECA_THETH      ----------------SVRLDVRKsgqpikvgneavgvKv
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxSlRLnLKKxqxxxxxxxxxxxdqr

                                           570       580       590       600
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xvRVvxspvlpxexEaxfxIxxxeGInnxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               iaRLIdaPhLP-EgEAvFsIt-eKGIeD------------
A Archaeoglobus_fulgidus            iaRLIdSPhLP-EgEAiFrVt-erGIeDa-eekdkkkrk-
A Pyrococcus_abyssi                 vaRLIdaPhLP-EgEAvFrIt-eKGIeD------------
============================================================================
A METHANOCOCCUS_VOLTAE              vaKLydSPhLP-DaEAiFrIt-eKGIqD------------
A Methanococcus_jannaschii          vaKLydSPhLP-DaEAmFrIt-eKGIHD------------
A Methanococcus_maripaludis         vaKLydSPhLP-DsEAvFrIt-eKGIqD------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           iaRVVdaPhLP-EgEvvFaLt-eEGIrD--ae--------
A Desulfurococcus_amylolyticus      iaRVVdaPhLP-EgEvvFvIt-eEGIrD--se--------
A Sulfolobus_acidocaldarius         iaRIVdaPhLP-EgEvvFaIt-eEGVrD--ae--------
A Sulfolobus_tokodaii               iaRIVdaPhLP-EgEvvFaIt-eEGVrD--ae--------
A Aeropyrum_pernix-RADA             iaRVVdaPhLP-EgEtvFaIt-ewGIrD--pe--------
A Aeropyrum_pernix-RADA_VAR_OH1     iaRVVdaPhLP-EgEtvFaIt-ewGIrD--pe--------
A Aeropyrum_pernix-RADA_VAR_OH2     iaRVVdaPhLP-EgEtvFaIt-ewGIrD--pe--------
A Aeropyrum_pernix-RADA_VAR_OH3     iaRVVdaPhLP-EgEtvFaIt-ewGIrD--pe--------
A Aeropyrum_pernix-RADA_VAR_TB1     iaRVVdaPhLP-EgEtvFaIt-ewGIrD--pe--------
A Aeropyrum_pernix-RADA_VAR_TB2     iaRVVdaPhLP-EgEtvFaIt-ewGIrD--pe--------
A Aeropyrum_pernix-RADA_VAR_TB6     iaRVVdaPhLP-EgEAvFaIt-ewGIrD--pe--------
============================================================================
* HUMAN                             icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* S_CEREVISIAE                      lcKVVdSPcLP-EaEcvFaIy-eDGVgD---p-r------
* Apis_mellifera                    icKIydSPcLP-EsEAmFaIn-aDGIgD---v-k------
* Aspergillus_flavus                vcKIydSPcLP-EsDclFaIn-eDGIgDp-sp-k------
* Aspergillus_fumigatus             vcKIydSPcLP-EsDclFaIn-eDGIgDp-sp-k------
* Bovine                            icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* C_elegans                         vaKMVqSPnLP-EaEAtYsIt-nhGIeD---a-r------
* Candida_albicans                  icKIydSPcLP-EsEciFaIy-eDGIgD---p-k------
* Candida_glabrata                  ycKVVdSPcLP-EaEcvFaIy-eDGIgD---p-r------
* Canis_lupus                       icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Chaetomium_globosum               iaKIydSPcLP-EgDAlFaIn-eDGIgDp--spk------
* Coccidioides_immitis              icKIydSPcLP-EsDclFaIn-eDGIgDp-sp-k------
* Coprinus_cinereus                 acKIydSPcLP-EsEttFaIl-pgGIgD---p-e------
* Cricetulus_griseus                icKVydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Cryptococcus_neoformans           vcKIVdSPcLP-EaEAiFaIn-pnGIgD---p-e------
* Danio_rerio                       icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Debaryomyces_hansenii             icKIydSPcLP-EsEcvFaIy-eDGIgD---p-k------
* D_melanogaster                    icKIydSPcLP-EsEAmFaIl-pDGIgD---a-r------
* D_pseudoobscura                   icKIydSPcLP-EsEAmFaIl-pDGIgD---a-k------
* Emericella_nidulans               vcKIydSPcLP-EsDclFaIn-eDGIgDp-sp-k------
* Encephalitozoon_cuniculi          icKIydSPcLP-EsEAvFaIt-eQGIND---p-d------
* Eremothecium_gossypii             lcKVVdSPcLP-EaEcvFaIy-eDGIgD---p-r------
* Chicken                           icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Gibberella_zeae                   iaKIydSPcLP-EsDtlFaIg-eEGIgDp-ap-k------
* Kluyveromyces_lactis              ycKVVdSPcLP-EaEcvFaIy-eDGIgD---p-r------
* Mouse                             icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Neurospora_crassa                 iaKIydSPcLP-EsDclFaIn-eDGIgDp-sp-k------
* Rabbit                            icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Pichia_angusta                    icKIydSPcLa-EsEtvFaLg-qgGViD---p-s------
* Rat                               icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Schizosaccharomyces_pombe         icKIydSPcLP-EsEAiFaIn-sDGVgD---p-k------
* Strongylocentrotus_purpuratus     icKIydSPcLP-EaEAmFaIn-pDGVgD---a-k------
* Tetraodon_nigroviridis            icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Tribolium_castaneum               vcKIydSPcLP-EsEAiFaIr-pDGIgD---v-q------
* Ustilago_maydis                   icRIadSPcLP-EaDAvFaIg-pEGIiD---p-v------
* X_tropicalis                      icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* Yarrowia_lipolytica               icKIydSPcLP-EsgcvFaIh-eDGIgD---p-k------
* X_laevis-RA51A                    icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
* X_laevis-RA51B                    icKIydSPcLP-EaEAmFaIn-aDGVgD---a-k------
  Cryptosporidium_hominis           icKIydSPnLP-EgDAtFsIt-egGIND---p-k------
  Cryptosporidium_parvum            icKIydSPnLP-EgDAtFsIt-egGIND---p-k------
  Dictyostelium_discoideum          icKIydSPsLP-EsEkpFgIy-sDGISD---y-k------
  Entamoeba_histolytica             icKVydSPcLP-EsEAsFaIt-tnGIeD---v-k------
  Leishmania_donovani               iIKVydSPcLa-EaEAiFgIy-dDGVgD---a-r------
  Leishmania_tropica                iIKVydSPcLa-EaEAiFgIy-dDGVgD---a-r------
  Plasmodium_berghei                icKIydSPVLP-EgEAvFaIt-egGIaD---y-e------
  Plasmodium_falciparum             icKIydSPVLP-EgEAvFaIt-egGIaD---y-e------
  Tetrahymena_thermophila           icKIydSPcLP-EsEAiYaIg-kgGIeD---f-n------
  Theileria_annulata                icKVydSPVLP-EgEAvFaIt-dgGIND---y-h------
  Theileria_parva                   icKIydSPVLP-EgEAvFaIt-dgGIND---y-h------
  Trypanosoma_brucei                iIKVydSPcLa-EsEAiFgIy-enGVgD---v-r------
  Trypanosoma_cruzi                 iMKVydSPcLa-EaEAiFgIy-eDGVgD---a-r------
P Arabidopsis_thaliana              icKVIsSPcLP-EaEArFqIs-tEGVtD---c-k------
P Oryza_sativa                      icKVIsSPcLa-EaEArFqIa-sEGVaD---v-k------
P Maize-R51A1                       icKVIsSPcLa-EaEArFqLa-sEGIaD---v-k------
P Maize-R51A2                       icKVIsSPcLa-EaEArFqIs-sEGVtD---v-k------
============================================================================
B E_COLI                            rVKVVkNkIaapfkQAeFqIlygEGINf-yge-------l
B MYCOBACTERIUM_SMEGMATIS           rVKVVkNkVsPpfkQAeFdIlygQGISr-egs-------l
B MYCOBACTERIUM_TUBERCULOSIS        rVKIVkNkxsPpfkQAeFdIlygrGISr-egs-------l
B Acinetobacter_calcoaceticus       kVKVVkNkMaPpfrEAiFqIlygKGVNq-lge-------l
B Actinobacillus_pleuropneumoniae   kVKIVkNkVaPpfrEvqFdImygEGISr-mne-------l
B Actinobacillus_succinogenes       rVKVVkNkLaapfrtvdFqImygEGISk-nge-------l
B Actinomyces_bovis                 rVKVVkNkVsPpfkQAeFdIlygQGISk-egs-------l
B Azotobacter_vinelandii            rVKVVkNkVaPpfrQAeFqIlygKGIyr-nge-------i
B Bacillus_clausii                  kIKVVkNkVaPpfrlAevdImygEGISr-egs-------m
B Bacillus_halodurans               kIKVVkNkVaPpfkQAevdImygEGISr-egs-------i
B Bacillus_licheniformis            kIKVVkNkVaPpfrtAevdImygEGISk-ege-------i
B Bacillus_megaterium               rIKVVkNkVaPpfraAevdImygEGISk-ege-------i
B Bacillus_subtilis                 kIKVVkNkVaPpfrtAevdImygEGISk-ege-------i
B Bordetella_pertussis              rVKVVkNkVaPpfkQAeFdImygsGISr-ege-------i
B Burkholderia_fungorum             rVKVVkNkVsPpfrEAiFdIlygEGISr-qge-------i
B Chromobacterium_violaceum         rVKVVkNkVsPpfrQAdFeIlygEGISr-qge-------i
B Clostridium_acetobutylicum        rVKVVkNkVaPpfkQAeFdImynEGISr-egn-------i
B Clostridium_thermocellum          kVKVVkNkVaPpfkEAeFdIiygQGISk-egn-------i
B Colwellia_psychrerythraea         rVKVVkNkIaPpfkQAeFqIlygEGINN-lge-------l
B Corynebacterium_efficiens         raKIVkNkVsPpfkiAeFdIiygEGISr-ess-------i
B Desulfotalea_psychrophila         rVKVVkNkVaPpfkiAeFdIiygEGISk-igd-------m
B Enterococcus_faecalis             kIKVVkNkVaPpfkvAevdImygQGISq-ege-------l
B Haemophilus_ducreyi               kVKIVkNkVaPpfrEvqFdImygEGIar-mne-------l
B Haemophilus_influenzae            rVKVVkNkLaapfrQvdFqIlygEGISk-age-------l
B Histophilus_somni                 rVKVVkNkVaPpfrQvdFqIlygEGISr-nge-------l
B Kineococcus_radiotolerans         rVKVVkNkVsPpfkQAeFdIiygQGISr-egg-------l
B Leifsonia_xyli                    rVKVVkNkMaPpfkQAeFdIlygvGISH-egs-------l
B Mannheimia_succiniciproducens     rVKVVkNkLaPpfrQvdFqIlygEGISk-nge-------l
B Nitrosomonas_europaea             rVKIVkNkVaPpfkQAdFdIlygEGISr-ese-------i
B Nitrosomonas_eutropha             rVKVVkNkVaPpfkQAdFaIlygEGISr-ese-------i
B Oceanobacillus_iheyensis          rIKVVkNkVaPpfkQAevdImygKGISk-ege-------v
B Pasteurella_multocida             rVKVVkNkVaapfrQvdFqIlygQGISk-tge-------l
B Photobacterium_profundum          rIKVVkNkIaapfkQAetqIlygQGfNr-nge-------l
B Photorhabdus_luminescens          rVKVVkNkVaapfkQAeFqImygEGINt-yge-------l
B Proteus_mirabilis                 rVKVVkNkVaapfkQAeFqImygEGINt-yge-------l
B Pseudomonas_cepacia               rVKVVkNkVsPpfrEAiFdIlygEGISr-qge-------i
B Pseudomonas_pseudomallei          rVKVVkNkVsPpfrEAiFdIlygEGISr-qge-------i
B Shewanella_amazonensis            rVKVVkNkIaapfrQAdFqIlygQGINr-tge-------l
B Shewanella_putrefaciens           rVKVVkNkVaapfkQAeFqIlygQGINr-tge-------l
B Streptomyces_avermitilis          rVKVVkNkVaPpfkQAeFdIlygQGISr-egg-------l
B Vibrio_alginolyticus              rIKVVkNkIaapfkEAntqImygQGfNr-ege-------l
B Vibrio_angustum                   rIKVVkNkIaapfkQAetqIlygQGfNr-nge-------l
B Vibrio_cholerae                   rIKVVkNkIaapfkEAntqImygQGfNr-ege-------l
B Vibrio_fischeri                   rIKVVkNkIaapfkQAetqImygQGfNr-ege-------l
B Vibrio_parahaemolyticus           rIKVVkNkIaapfkEAntqImygQGfNr-ege-------l
B Vibrio_splendidus                 rIKVVkNkIaapfkQAetqIlygKGfNr-ege-------l
B Vibrio_vulnificus                 rIKVVkNkIaapfkEAntqImygQGfNr-ege-------l
B Yersinia_enterocolitica           rVKVVkNkIaapfkQAeFqIlygEGINi-nge-------l
B Cupriavidus_metallidurans-Q1LR74  kVKVVkNkVsPpfrEAfFdIlygQGISr-qge-------i
B Cupriavidus_metallidurans-RECA    kVKVVkNkVsPpfrEAfFdIlygQGISr-qge-------i
B Erwinia_carotovora-RECA           rVKVVkNkIaapfkQAeFqImygEGINt-fge-------l
B Erwinia_carotovora-RECA_ERWCT     rVKVVkNkVaapfkQAeFqIlygEGINi-hge-------l
B Listeria_monocytogenes-RECA       kIKVVkNkVaPpfriAevdImygEGISr-ege-------l
B Listeria_monocytogenes-RECA_LISMF kIKVVkNkVaPpfriAevdImygEGISr-ege-------l
B Neisseria_gonorrhoeae-RECA        rVKVIkNkVaPpfrQAeFdIlygEGISw-ege-------l
B Neisseria_gonorrhoeae-RECA_VAR    rVKVIkNkVaPpfrQAeFdIlygEGISw-ege-------l
B Salmonella_typhi-RECA             rVKVVkNkIaapfkQAeFqIlygEGINf-yge-------l
B Salmonella_typhi-RECA_SALPA       rVKVVkNkIaapfkQAeFqIlygEGINf-yge-------l
B Streptomyces_coelicolor-RECA      rVKVVkNkVaPpfkQAeFdIlygQGISr-egg-------l
B Streptomyces_coelicolor-RECA_STRL rVKVVkNkVaPpfkQAeFdIlygQGISr-egg-------l
B Xylella_fastidiosa-RECA           kIKVVkNkLaPpfkQvvteIlygEGISr-ege-------l
B Xylella_fastidiosa-RECA_XYLFT     kIKVVkNkLaPpfkQvvteIlygEGISr-ege-------l
B Yersinia_pestis-RECA              rVKVVkNkIaapfkQAeFqIlygEGINi-nge-------l
B Yersinia_pestis-RECA_YERPS        rVKVVkNkIaapfkQAeFqIlygEGINi-nge-------l
B Mycobacterium_tuberculosis-RECA   rVKVVkNkcsPpfkQAeFdIlygKGISr-egs-------l
B Mycobacterium_tuberculosis-RECA_M rVKIVkNkVsPpfkQAeFdIlygrGISr-egs-------l
B Neisseria_meningitidis-RECA       rVKVIkNkVaPpfrQAeFdIlygEGISw-ege-------l
B Neisseria_meningitidis-RECA_NEIMA rVKVIkNkVaPpfrQAeFdIlygEGISw-ege-------l
B Neisseria_meningitidis-RECA_VAR   rVKVIkNkVaPpfrQAeFdIlygEGISw-ege-------l
B Xanthomonas_vasicola-RECA_XANAC   kIKVVkNkLaPpfkQvvteIlygEGISr-ege-------l
B Xanthomonas_vasicola-RECA_XANCP   kIKVVkNkLaPpfkQviteIlygEGISr-ege-------l
B Xanthomonas_vasicola-YP_201580    kIKVVkNkLaPpfkQvvteIlygEGISr-ege-------l
B Pseudomonas_aeruginosa-Q48F94     rVKVVkNkVaPpfrQAeFqIlygKGIyl-nge-------i
B Pseudomonas_aeruginosa-RECA       rVKVVkNkVsPpfrQAeFqIlygKGIyr-tge-------i
B Pseudomonas_aeruginosa-RECA_PSEF5 rVKIVkNkVaPpfrQAeFqIlygKGIyl-nge-------i
B Pseudomonas_aeruginosa-RECA_PSEFL rVKVVkNkVaPpfrQAeFqIlygKGIyl-nge-------m
B Pseudomonas_aeruginosa-RECA_PSEPK rVKIVkNkVsPpfrQAeFqIlygKGIyr-nge-------i
B Pseudomonas_aeruginosa-RECA_PSEPU rVKIVkNkVsPpfrQAeFqIlygKGIyr-nge-------i
B Pseudomonas_aeruginosa-RECA_PSESM rVKVVkNkVaPpfrQAeFqIlygKGIyl-nge-------i
============================================================================
B DEINOCOCCUS_RADIODURANS           kIKtVkNkVaapfkEvelaLvygKGfDq-lsd-------l
B Deinococcus_geothermalis          kVKtVkNkVaPpfkEveltLlygKGfDq-lsd-------l
B Thermus_aquaticus-RECA            kVKVVkNkLaPpfrEAeleIyfgrGLDp-vmd-------l
B Thermus_aquaticus-RECA_THET2      rVKVVkNkLaPpfrEAeleIyfgrGLDp-vad-------l
B Thermus_aquaticus-RECA_THET8      rVKVVkNkLaPpfrEAeleIyfgrGLDp-vad-------l
B Thermus_aquaticus-RECA_THETH      rVKVVkNkLaPpfrEAeleIyfgrGLDp-vad-------l
============================================================================
  Consensus                         xvRVvxspvlpxexEaxfxIxxxeGInnxxxxxxxxxxxx

                                           610       620       630       640
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxexnxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               ----------------------------------------
A Archaeoglobus_fulgidus            ----k-----------------------------------
A Pyrococcus_abyssi                 ----------------------------------------
============================================================================
A METHANOCOCCUS_VOLTAE              ----------------------------------------
A Methanococcus_jannaschii          ----------------------------------------
A Methanococcus_maripaludis         ----------------------------------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           ---------------------------E------------
A Desulfurococcus_amylolyticus      ---------------------------Ee-----------
A Sulfolobus_acidocaldarius         ---------------------------E------------
A Sulfolobus_tokodaii               ---------------------------E------------
A Aeropyrum_pernix-RADA             ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH3     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB6     ----------------------------------------
============================================================================
* HUMAN                             ---------------------------D------------
* S_CEREVISIAE                      ---------------------------EeD-e--------
* Apis_mellifera                    ---------------------------E------------
* Aspergillus_flavus                ---------------------------D----lenn----
* Aspergillus_fumigatus             ---------------------------D----lend----
* Bovine                            ---------------------------D------------
* C_elegans                         ---------------------------E-D----------
* Candida_albicans                  ---------------------------veDne--------
* Candida_glabrata                  ---------------------------EeD-e--------
* Canis_lupus                       ---------------------------D------------
* Chaetomium_globosum               ---------------------------D-lek--e-----
* Coccidioides_immitis              ---------------------------D---lekde----
* Coprinus_cinereus                 ---------------------------EeS----------
* Cricetulus_griseus                ---------------------------D------------
* Cryptococcus_neoformans           ---------------------------Elq-e--------
* Danio_rerio                       ---------------------------D------------
* Debaryomyces_hansenii             ---------------------------teDd---dn----
* D_melanogaster                    ---------------------------Es-----------
* D_pseudoobscura                   ---------------------------EgH----------
* Emericella_nidulans               ---------------------------D----lend----
* Encephalitozoon_cuniculi          ---------------------------E------------
* Eremothecium_gossypii             ---------------------------EdDe---d-----
* Chicken                           ---------------------------E------------
* Gibberella_zeae                   ---------------------------D-tekd-------
* Kluyveromyces_lactis              ---------------------------EdD-d--------
* Mouse                             ---------------------------D------------
* Neurospora_crassa                 ---------------------------D-mekmnq-----
* Rabbit                            ---------------------------D------------
* Pichia_angusta                    ---------------------------Deteaaede----
* Rat                               ---------------------------D------------
* Schizosaccharomyces_pombe         ---------------------------Eiiapv-------
* Strongylocentrotus_purpuratus     ---------------------------D------------
* Tetraodon_nigroviridis            ---------------------------D------------
* Tribolium_castaneum               ---------------------------E------------
* Ustilago_maydis                   ---------------------------D------------
* X_tropicalis                      ---------------------------D------------
* Yarrowia_lipolytica               ---------------------------Dee----------
* X_laevis-RA51A                    ---------------------------D------------
* X_laevis-RA51B                    ---------------------------D------------
  Cryptosporidium_hominis           ---------------------------Dek----------
  Cryptosporidium_parvum            ---------------------------Dek----------
  Dictyostelium_discoideum          ---------------------------Eq-----------
  Entamoeba_histolytica             ---------------------------D-D----------
  Leishmania_donovani               ---------------------------D------------
  Leishmania_tropica                ---------------------------D------------
  Plasmodium_berghei                ---------------------------Ek-----------
  Plasmodium_falciparum             ---------------------------Ek-----------
  Tetrahymena_thermophila           ---------------------------E------------
  Theileria_annulata                ---------------------------Dr-----------
  Theileria_parva                   ---------------------------Dr-----------
  Trypanosoma_brucei                ---------------------------D------------
  Trypanosoma_cruzi                 ---------------------------D------------
P Arabidopsis_thaliana              ---------------------------D------------
P Oryza_sativa                      ---------------------------D------------
P Maize-R51A1                       ---------------------------D------------
P Maize-R51A2                       ---------------------------D------------
============================================================================
B E_COLI                            vdlgvkekliekagawysykgekigqgKaNa-----tawl
B MYCOBACTERIUM_SMEGMATIS           idmgvehgfirksgswftyegeqlgqgKeNa-----rkfl
B MYCOBACTERIUM_TUBERCULOSIS        idmgvdqgfirksgswftyegeqlgqgKeNa-----rtfl
B Acinetobacter_calcoaceticus       vdlavqqnivqkagawysyqgnkigqgKnNv-----iryl
B Actinobacillus_pleuropneumoniae   lilaeangfiqkagawfsyegtkigqgKnNa-----ikwl
B Actinobacillus_succinogenes       ielgvkqklvqksgawfayegqkigqgKaNa-----mkwl
B Actinomyces_bovis                 idmgveqgfirksgswytyegdqlgqgKeNa-----rkfl
B Azotobacter_vinelandii            idlgvqlglleksgawysyqgskigqgKaNa-----akfl
B Bacillus_clausii                  ldiaseldiveksgawysykgdrlgqgreNs-----kqfl
B Bacillus_halodurans               ldiaseldivqksgawysfnderlgqgreNa-----kqfl
B Bacillus_licheniformis            idlgteldivqksgawysyqeerlgqgreNa-----kqfl
B Bacillus_megaterium               ldiaseldivqksgswysynderlgqgreNa-----kqfl
B Bacillus_subtilis                 idlgteldivqksgswysyeeerlgqgreNa-----kqfl
B Bordetella_pertussis              idlgvqanvvdksgawysysgnrigqgKdNv-----reyl
B Burkholderia_fungorum             idlgvqakivdkagawysysgerigqgKdNa-----refl
B Chromobacterium_violaceum         ielgvkhgfidksgawyayngqkigqgKdNt-----rewl
B Clostridium_acetobutylicum        vdvgvkeniiqksgawfsygdirlgqgreNa-----klff
B Clostridium_thermocellum          ldvavnldivnksgawfsyngqkigqgreNa-----kqfl
B Colwellia_psychrerythraea         ielgvkhefvekagawyscngerigqgKaNa-----akyl
B Corynebacterium_efficiens         idlavdngivkksgswftyegdqlgqgKeka-----rlfl
B Desulfotalea_psychrophila         fdlavgldiidksgswysyknerigqgreNs-----kqfl
B Enterococcus_faecalis             ldmavekdlisksgawygykeerigqgreNa-----kqym
B Haemophilus_ducreyi               lilaeangfiqkagawfsyngtkigqgKnNa-----ikwl
B Haemophilus_influenzae            lelgvkhklveksgawysyngekigqgKaNs-----mkwl
B Histophilus_somni                 ielgvkhklvnksgawfsyegekigqgKtNa-----mkwl
B Kineococcus_radiotolerans         idlgvehgfvrksgawytyegdqlgqgKeNa-----rafl
B Leifsonia_xyli                    ldfgvehalvkksgawytyegdqlgqgKeNs-----rnfl
B Mannheimia_succiniciproducens     ielgvkhklvdksgawyayngdkigqgKaNa-----mkwl
B Nitrosomonas_europaea             ielgvlhkliekagawysyngekigqgKdNv-----rdyl
B Nitrosomonas_eutropha             ielgvlhkliekagawysyngekigqgrdNv-----rdyl
B Oceanobacillus_iheyensis          ldigsdldivmksgawysynndrlgqgreNa-----kqyl
B Pasteurella_multocida             ielgvkhklvdkagawyayngekigqgKaNa-----mkwl
B Photobacterium_profundum          idlgvkhklvekagawysykgnkigqgKaNs-----ckhl
B Photorhabdus_luminescens          idlgvkhklvekagawysyngdkigqgKaNa-----tiyl
B Proteus_mirabilis                 idlgvkhklvekagawysyngekigqgKaNa-----tnyl
B Pseudomonas_cepacia               idlgvqakivdkagawysyngekigqgKdNa-----refl
B Pseudomonas_pseudomallei          idlgvqakivdkagawysysgekigqgKdNa-----refl
B Shewanella_amazonensis            vdlgvlhklieksgawysykgdkigqgraNa-----tkfl
B Shewanella_putrefaciens           vdlgvahkliekagawysykgdkigqgraNa-----gkyl
B Streptomyces_avermitilis          idmgvengfvrkagawytyegdqlgqgKeNa-----rnfl
B Vibrio_alginolyticus              vdlgvkhklvekagawysyngdkigqgKaNa-----cnyl
B Vibrio_angustum                   idlgvkhklvekagawysyqgdkigqgKaNs-----ckyl
B Vibrio_cholerae                   idlgvkhkmveksgawysyngdkigqgKaNa-----ckyl
B Vibrio_fischeri                   idlgvkhklvdkagawysyngdkigqgKaNa-----skfm
B Vibrio_parahaemolyticus           idlgvkhklvekagawysyngdkigqgKaNa-----cnyl
B Vibrio_splendidus                 idlgvknklvekagawysykgdkigqgKsNs-----ckhl
B Vibrio_vulnificus                 idlgvkcklieksgawysyngdkigqgKaNa-----ckyl
B Yersinia_enterocolitica           vdlgvkhkliekagawysyngdkigqgKaNa-----snyl
B Cupriavidus_metallidurans-Q1LR74  idlgvdakivekagawysyngekigqgKdNa-----reyl
B Cupriavidus_metallidurans-RECA    idlgvdakivekagawysyngekigqgKdNa-----reyl
B Erwinia_carotovora-RECA           idlgvkhklvekagawysyngekigqgKaNa-----ttyl
B Erwinia_carotovora-RECA_ERWCT     vdlgvkhkliekagawysyngdkigqgKaNa-----cnfl
B Listeria_monocytogenes-RECA       vdmaaevdvinksgswysykeerigqgreNa-----kqyl
B Listeria_monocytogenes-RECA_LISMF vdmaaevdvinksgswysykeerigqgreNa-----kqyl
B Neisseria_gonorrhoeae-RECA        idigvkndiinksgawysyngakigqgKdNv-----rvwl
B Neisseria_gonorrhoeae-RECA_VAR    idigvkndiinksgawysyngakigqgKdNv-----rvwl
B Salmonella_typhi-RECA             vdlgvkekliekagawysyngekigqgKaNa-----ttwl
B Salmonella_typhi-RECA_SALPA       vdlgvkekliekagawysyngekigqgKaNa-----ttwl
B Streptomyces_coelicolor-RECA      idmgvengfvrkagawytyegdqlgqgKeNa-----rnfl
B Streptomyces_coelicolor-RECA_STRL idmgvengfvrkagawytyegdqlgqgKeNa-----rnfl
B Xylella_fastidiosa-RECA           iemgveaklvekagawysyggerigqgKdNa-----rgyl
B Xylella_fastidiosa-RECA_XYLFT     iemgveaklvekagawysyggerigqgKdNa-----rgyl
B Yersinia_pestis-RECA              vdlgvkhkliekagawysyngdkigqgKaNa-----snyl
B Yersinia_pestis-RECA_YERPS        vdlgvkhkliekagawysyngdkigqgKaNa-----snyl
B Mycobacterium_tuberculosis-RECA   idmgvdqglirksgawftyegeqlgqgKeNa-----rnfl
B Mycobacterium_tuberculosis-RECA_M idmgvdqgfirksgswftyegeqlgqgKeNa-----rtfl
B Neisseria_meningitidis-RECA       idigvkndiinksgawysyngakigqgKdNv-----rvwl
B Neisseria_meningitidis-RECA_NEIMA idigvkndiinksgawysyngakigqgKdNv-----rvwl
B Neisseria_meningitidis-RECA_VAR   idigvkndiinksgawysyngakigqgKdNv-----rvwl
B Xanthomonas_vasicola-RECA_XANAC   idmgveaklvdkagawysygderigqgKdNa-----rtyl
B Xanthomonas_vasicola-RECA_XANCP   idmgveaklvdkagawysygderigqgKdNa-----rgyl
B Xanthomonas_vasicola-YP_201580    idmgveaklvekagawysygderigqgKdNa-----rtyl
B Pseudomonas_aeruginosa-Q48F94     vdlavlhgfveksgawysyqgskigqgKaNs-----akfl
B Pseudomonas_aeruginosa-RECA       idlgvqlglveksgawysyqgskigqgKaNa-----akyl
B Pseudomonas_aeruginosa-RECA_PSEF5 idlgvlhgfleksgawysyqgnkigqgKaNs-----akfl
B Pseudomonas_aeruginosa-RECA_PSEFL idlgvlhgfveksgawyayngskigqgKaNs-----akfl
B Pseudomonas_aeruginosa-RECA_PSEPK idlgvsqglveksgawyayqgnkigqgKaNa-----akyl
B Pseudomonas_aeruginosa-RECA_PSEPU idlgvsqglveksgawyayqgnkigqgKaNa-----akyl
B Pseudomonas_aeruginosa-RECA_PSESM vdlavlhgfveksgawysyqgskigqgKaNs-----akfl
============================================================================
B DEINOCOCCUS_RADIODURANS           vglaadmdiikkagsfysygderigqgKekt-----iayi
B Deinococcus_geothermalis          vtlaadmdiikkagsfysygeerigqgKeka-----iayi
B Thermus_aquaticus-RECA            vnvavaagviekagswfsygehrlgqgKeka-----aeyl
B Thermus_aquaticus-RECA_THET2      vnvavaagviekagswfsygelrlgqgKeka-----aeal
B Thermus_aquaticus-RECA_THET8      vnvavaagviekagswfsygelrlgqgKeka-----aeal
B Thermus_aquaticus-RECA_THETH      vnvavaagviekagswfsygelrlgqgKeka-----aeal
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxexnxxxxxxxxxx

                                           650       660       670       680
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               ----------------------------------------
A Archaeoglobus_fulgidus            ----------------------------------------
A Pyrococcus_abyssi                 ----------------------------------------
============================================================================
A METHANOCOCCUS_VOLTAE              ----------------------------------------
A Methanococcus_jannaschii          ----------------------------------------
A Methanococcus_maripaludis         ----------------------------------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           ----------------------------------------
A Desulfurococcus_amylolyticus      ----------------------------------------
A Sulfolobus_acidocaldarius         ----------------------------------------
A Sulfolobus_tokodaii               ----------------------------------------
A Aeropyrum_pernix-RADA             ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH3     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB6     ----------------------------------------
============================================================================
* HUMAN                             ----------------------------------------
* S_CEREVISIAE                      ----------------------------------------
* Apis_mellifera                    ----------------------------------------
* Aspergillus_flavus                ----------------------------------------
* Aspergillus_fumigatus             ----------------------------------------
* Bovine                            ----------------------------------------
* C_elegans                         ----------------------------------------
* Candida_albicans                  ----------------------------------------
* Candida_glabrata                  ----------------------------------------
* Canis_lupus                       ----------------------------------------
* Chaetomium_globosum               ----------------------------------------
* Coccidioides_immitis              ----------------------------------------
* Coprinus_cinereus                 ----------------------------------------
* Cricetulus_griseus                ----------------------------------------
* Cryptococcus_neoformans           ----------------------------------------
* Danio_rerio                       ----------------------------------------
* Debaryomyces_hansenii             ----------------------------------------
* D_melanogaster                    ----------------------------------------
* D_pseudoobscura                   ----------------------------------------
* Emericella_nidulans               ----------------------------------------
* Encephalitozoon_cuniculi          ----------------------------------------
* Eremothecium_gossypii             ----------------------------------------
* Chicken                           ----------------------------------------
* Gibberella_zeae                   ----------------------------------------
* Kluyveromyces_lactis              ----------------------------------------
* Mouse                             ----------------------------------------
* Neurospora_crassa                 ----------------------------------------
* Rabbit                            ----------------------------------------
* Pichia_angusta                    ----------------------------------------
* Rat                               ----------------------------------------
* Schizosaccharomyces_pombe         ----------------------------------------
* Strongylocentrotus_purpuratus     ----------------------------------------
* Tetraodon_nigroviridis            ----------------------------------------
* Tribolium_castaneum               ----------------------------------------
* Ustilago_maydis                   ----------------------------------------
* X_tropicalis                      ----------------------------------------
* Yarrowia_lipolytica               ----------------------------------------
* X_laevis-RA51A                    ----------------------------------------
* X_laevis-RA51B                    ----------------------------------------
  Cryptosporidium_hominis           ----------------------------------------
  Cryptosporidium_parvum            ----------------------------------------
  Dictyostelium_discoideum          ----------------------------------------
  Entamoeba_histolytica             ----------------------------------------
  Leishmania_donovani               ----------------------------------------
  Leishmania_tropica                ----------------------------------------
  Plasmodium_berghei                ----------------------------------------
  Plasmodium_falciparum             ----------------------------------------
  Tetrahymena_thermophila           ----------------------------------------
  Theileria_annulata                ----------------------------------------
  Theileria_parva                   ----------------------------------------
  Trypanosoma_brucei                ----------------------------------------
  Trypanosoma_cruzi                 ----------------------------------------
P Arabidopsis_thaliana              ----------------------------------------
P Oryza_sativa                      ----------------------------------------
P Maize-R51A1                       ----------------------------------------
P Maize-R51A2                       ----------------------------------------
============================================================================
B E_COLI                            kdnpetakeiekkvre-l--l--ls-n-------------
B MYCOBACTERIUM_SMEGMATIS           lentdvaneiekkike-k--l--g----------------
B MYCOBACTERIUM_TUBERCULOSIS        menddvaneiekkike-k--l--gi-g-------------
B Acinetobacter_calcoaceticus       eenpqisteieavire-q--l--lt-k-------------
B Actinobacillus_pleuropneumoniae   kenpeiaekieqdire-q--l--is-t-------------
B Actinobacillus_succinogenes       adnpekaaeleskira-e--f--qe-n-------------
B Actinomyces_bovis                 lentdvrdeiekkike-k--l--g----------------
B Azotobacter_vinelandii            ednpevaaaveksird-q--l--la-a-------------
B Bacillus_clausii                  kenpeitaeierlird-h--h--gl-d----------ge-
B Bacillus_halodurans               kenpeaaeeiesrire-h--y--glng-------------
B Bacillus_licheniformis            kenkdillmiqeqire-h--y--g----------------
B Bacillus_megaterium               kentdirqeiagqvre-h--h--gl-d-------------
B Bacillus_subtilis                 kenkdimlmiqeqire-h--y--gl-d-------------
B Bordetella_pertussis              kehkemaieienkvre-nqgi--vs-r-------------
B Burkholderia_fungorum             renpdiareienrire-s--l-----g-------------
B Chromobacterium_violaceum         kanpaiadeierkire-a--v--gv-k-------------
B Clostridium_acetobutylicum        kenidirsevenkire-kydl--pi-q-------------
B Clostridium_thermocellum          kenpeiakeietkire-n--y--nq-t-------------
B Colwellia_psychrerythraea         dehpemakdvdtklrd-m--f--ls-k-------------
B Corynebacterium_efficiens         ketpeladeieekifr-k--l--gv-g-kf----------
B Desulfotalea_psychrophila         mdtpaicheieekvrs-a--y--g----------------
B Enterococcus_faecalis             adhpemmaevsklvrd-a--y--g----------------
B Haemophilus_ducreyi               kenpevaekieqeirn-l--l--il-t-------------
B Haemophilus_influenzae            nenieksdelearlra-e--l--va-n-------------
B Histophilus_somni                 aehpeqaaileqklrs-e--l--la-n-------------
B Kineococcus_radiotolerans         rdnpdlgdeiekrike-k--l--gi-g-------------
B Leifsonia_xyli                    ianpdiaaeienkiki-k--l--g----------------
B Mannheimia_succiniciproducens     aenptvaaelenkira-e--l--la-n-------------
B Nitrosomonas_europaea             kehksiaheieqkir-------------------------
B Nitrosomonas_eutropha             kehkdlaheieqkir-----------a-------------
B Oceanobacillus_iheyensis          keheevlteihqsirq-h--y--el-d-------------
B Pasteurella_multocida             eehpeealaletklrn-e--l--la-n-------------
B Photobacterium_profundum          venpaiaeeiekllrd-m--l--ls-p-------------
B Photorhabdus_luminescens          kehpevateldkklre-m--l--lh-n-------------
B Proteus_mirabilis                 kehpemynelntklre-m--l--ln-h-------------
B Pseudomonas_cepacia               renpeiareienrire-s--l-----g-------------
B Pseudomonas_pseudomallei          renpeiareienrire-s--l-----g-------------
B Shewanella_amazonensis            aenteiaaeiektlre-m--l--l----------------
B Shewanella_putrefaciens           tenpaiaaeidktlrell--l--sn-p-------------
B Streptomyces_avermitilis          kdnpdlaneiekkike-k--l--gv-gvrpeeptaepgad
B Vibrio_alginolyticus              rehpevaktidtklre-m--l--la-p-------------
B Vibrio_angustum                   venpaiaaeietklrd-l--l--lt---------------
B Vibrio_cholerae                   kenpeiaktldkklre-m--l--ln-p-------------
B Vibrio_fischeri                   rentevaaeldkklre-m--l--lt-p-------------
B Vibrio_parahaemolyticus           rehpeiaktidtklre-m--l--ls---------------
B Vibrio_splendidus                 renpeialeldtklre-l--l--l----------------
B Vibrio_vulnificus                 kenvdvakvldtklre-m--l--ls---------------
B Yersinia_enterocolitica           kenpavaaeldkklre-m--l--ln-g-------------
B Cupriavidus_metallidurans-Q1LR74  renpdiadeienkvrl-a--l--gv-a-------------
B Cupriavidus_metallidurans-RECA    renpdiadeienkvrl-a--l--gv-a-------------
B Erwinia_carotovora-RECA           kehpemynelntklre-m--llnh----------------
B Erwinia_carotovora-RECA_ERWCT     kenptisaeldkklre-m--llhk----------------
B Listeria_monocytogenes-RECA       kehtdirdeiskrvre-e--y--e----------------
B Listeria_monocytogenes-RECA_LISMF kehtdirdeiskrvre-e--y--e----------------
B Neisseria_gonorrhoeae-RECA        kenpeisdeidakira-l--n--gv-e-------------
B Neisseria_gonorrhoeae-RECA_VAR    kenpeisdeidakira-l--n--gv-e-------------
B Salmonella_typhi-RECA             kenpatakeiekrvre-l--l--ls-n-------------
B Salmonella_typhi-RECA_SALPA       kenpatakeiekrvre-l--l--ls-n-------------
B Streptomyces_coelicolor-RECA      kdnpdlaneiekkikq-k--l--gv-g-------------
B Streptomyces_coelicolor-RECA_STRL kdnpdlaneiekkikq-k--l--gv-g-------------
B Xylella_fastidiosa-RECA           renphlaakleadlre-k--f--ep-t-------------
B Xylella_fastidiosa-RECA_XYLFT     renphfaakleadlre-k--f--ep-t-------------
B Yersinia_pestis-RECA              kenpaiaaeldkklre-m--l--ln-g-------------
B Yersinia_pestis-RECA_YERPS        kenpaiaaeldkklre-m--l--ln-g-------------
B Mycobacterium_tuberculosis-RECA   venadvadeiekkike-k--l--gi-g-------------
B Mycobacterium_tuberculosis-RECA_M mendevaneiekkike-k--l--gi-g-------------
B Neisseria_meningitidis-RECA       kenpevaneidakira-l--n--gv-e-------------
B Neisseria_meningitidis-RECA_NEIMA kenpevadeidakira-l--n--gv-e-------------
B Neisseria_meningitidis-RECA_VAR   kenpevaneidakira-l--n--gv-e-------------
B Xanthomonas_vasicola-RECA_XANAC   rdnsqvatrleaelre-k--f--q----------------
B Xanthomonas_vasicola-RECA_XANCP   rdnpqvaikleaelre-k--f--q----------------
B Xanthomonas_vasicola-YP_201580    rdnpqvavrleaelre-k--f--q----------------
B Pseudomonas_aeruginosa-Q48F94     adnpeickalekqird-k--l--lt-p-------------
B Pseudomonas_aeruginosa-RECA       ednpeigsvlektird-q--l--l----------------
B Pseudomonas_aeruginosa-RECA_PSEF5 qdnpeignalekqire-k--l--l----------------
B Pseudomonas_aeruginosa-RECA_PSEFL adnpdivatlekqird-k--l--l----------------
B Pseudomonas_aeruginosa-RECA_PSEPK aenpaigaeiekqire-k--l--l----------------
B Pseudomonas_aeruginosa-RECA_PSEPU aenpaigaeiekqird-k--l--l----------------
B Pseudomonas_aeruginosa-RECA_PSESM adnpeickalekqird-k--l--l----------------
============================================================================
B DEINOCOCCUS_RADIODURANS           aerpemeqeirdrvma-a--i--ra-g-------------
B Deinococcus_geothermalis          aerpeleqeirdrvla-a--i--k----------------
B Thermus_aquaticus-RECA            rerpelleeirakvl-------------------------
B Thermus_aquaticus-RECA_THET2      rerpelleeirtkvl-------------------------
B Thermus_aquaticus-RECA_THET8      rerpelleeirakvl-------------------------
B Thermus_aquaticus-RECA_THETH      rerpelleeirakvl-------------------------
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                                           690       700       710       720
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               ----------------------------------------
A Archaeoglobus_fulgidus            ----------------------------------------
A Pyrococcus_abyssi                 ----------------------------------------
============================================================================
A METHANOCOCCUS_VOLTAE              ----------------------------------------
A Methanococcus_jannaschii          ----------------------------------------
A Methanococcus_maripaludis         ----------------------------------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           ----------------------------------------
A Desulfurococcus_amylolyticus      ----------------------------------------
A Sulfolobus_acidocaldarius         ----------------------------------------
A Sulfolobus_tokodaii               ----------------------------------------
A Aeropyrum_pernix-RADA             ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH3     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB6     ----------------------------------------
============================================================================
* HUMAN                             ----------------------------------------
* S_CEREVISIAE                      ----------------------------------------
* Apis_mellifera                    ----------------------------------------
* Aspergillus_flavus                ----------------------------------------
* Aspergillus_fumigatus             ----------------------------------------
* Bovine                            ----------------------------------------
* C_elegans                         ----------------------------------------
* Candida_albicans                  ----------------------------------------
* Candida_glabrata                  ----------------------------------------
* Canis_lupus                       ----------------------------------------
* Chaetomium_globosum               ----------------------------------------
* Coccidioides_immitis              ----------------------------------------
* Coprinus_cinereus                 ----------------------------------------
* Cricetulus_griseus                ----------------------------------------
* Cryptococcus_neoformans           ----------------------------------------
* Danio_rerio                       ----------------------------------------
* Debaryomyces_hansenii             ----------------------------------------
* D_melanogaster                    ----------------------------------------
* D_pseudoobscura                   ----------------------------------------
* Emericella_nidulans               ----------------------------------------
* Encephalitozoon_cuniculi          ----------------------------------------
* Eremothecium_gossypii             ----------------------------------------
* Chicken                           ----------------------------------------
* Gibberella_zeae                   ----------------------------------------
* Kluyveromyces_lactis              ----------------------------------------
* Mouse                             ----------------------------------------
* Neurospora_crassa                 ----------------------------------------
* Rabbit                            ----------------------------------------
* Pichia_angusta                    ----------------------------------------
* Rat                               ----------------------------------------
* Schizosaccharomyces_pombe         ----------------------------------------
* Strongylocentrotus_purpuratus     ----------------------------------------
* Tetraodon_nigroviridis            ----------------------------------------
* Tribolium_castaneum               ----------------------------------------
* Ustilago_maydis                   ----------------------------------------
* X_tropicalis                      ----------------------------------------
* Yarrowia_lipolytica               ----------------------------------------
* X_laevis-RA51A                    ----------------------------------------
* X_laevis-RA51B                    ----------------------------------------
  Cryptosporidium_hominis           ----------------------------------------
  Cryptosporidium_parvum            ----------------------------------------
  Dictyostelium_discoideum          ----------------------------------------
  Entamoeba_histolytica             ----------------------------------------
  Leishmania_donovani               ----------------------------------------
  Leishmania_tropica                ----------------------------------------
  Plasmodium_berghei                ----------------------------------------
  Plasmodium_falciparum             ----------------------------------------
  Tetrahymena_thermophila           ----------------------------------------
  Theileria_annulata                ----------------------------------------
  Theileria_parva                   ----------------------------------------
  Trypanosoma_brucei                ----------------------------------------
  Trypanosoma_cruzi                 ----------------------------------------
P Arabidopsis_thaliana              ----------------------------------------
P Oryza_sativa                      ----------------------------------------
P Maize-R51A1                       ----------------------------------------
P Maize-R51A2                       ----------------------------------------
============================================================================
B E_COLI                            ------p---n--s---t---p----dfsv---d---d--
B MYCOBACTERIUM_SMEGMATIS           -----------------i---g----avvt---a---e--
B MYCOBACTERIUM_TUBERCULOSIS        ------a---v--v---t---d----dxs----d---d--
B Acinetobacter_calcoaceticus       ------a---s--d---q---t----a-ah---d---e--
B Actinobacillus_pleuropneumoniae   ------p---e--k---t---sag--eqnv---l---d--
B Actinobacillus_succinogenes       ------p---e--k---t---l----iael---d---g--
B Actinomyces_bovis                 -----------------i---g----adlt---a---e--
B Azotobacter_vinelandii            ------p---a--s---a---r----paal---a---d--
B Bacillus_clausii                  ------a---k--l---e---e----aae----e---q--
B Bacillus_halodurans               ------e---i--e---v---e----aps----e---e--
B Bacillus_licheniformis            -----------------l-dtg----gaap---a---q--
B Bacillus_megaterium               ------q---d--g---e---p----ape----d---d--
B Bacillus_subtilis                 ------n---n--g---v---v----qqqa---e---e--
B Bordetella_pertussis              ------a---a--t---f---p----asea---e---d--
B Burkholderia_fungorum             ------v---n--a---m---a----eaat---v---a--
B Chromobacterium_violaceum         ------i---e--i---n---e----nqg----d---e--
B Clostridium_acetobutylicum        ------k---v--k---n---e----kpk----i---e--
B Clostridium_thermocellum          ------f---l--m---s---i----naqv---d---t--
B Colwellia_psychrerythraea         --------------------------tvva---e---d--
B Corynebacterium_efficiens         ------a---q--t---a---d----elt----d---d--
B Desulfotalea_psychrophila         -----------------l---p----dree---t---k--
B Enterococcus_faecalis             -----------------igedg----stit---e---e--
B Haemophilus_ducreyi               ------p---d--q---p---asekleldv---n---d--
B Haemophilus_influenzae            ------p---e--q---a---l----madi---e---q--
B Histophilus_somni                 ------p---e--k---a-lla----dlea---e---s--
B Kineococcus_radiotolerans         ------a---r--l---d---a----paev---d---v--
B Leifsonia_xyli                    -----------------i---v----adpn---a---d--
B Mannheimia_succiniciproducens     ------p---e--q---a----------ll---a---d--
B Nitrosomonas_europaea             -------------a---a---v----glae---t---d--
B Nitrosomonas_eutropha             ------a---v--d---l---a----etn----n---r--
B Oceanobacillus_iheyensis          ------k------v---d---e----dkt----e---e--
B Pasteurella_multocida             ------p---e--k---v---l----aadi--ae---k--
B Photobacterium_profundum          ------a---v--e---e---v----eetd---a---k--
B Photorhabdus_luminescens          ------a---gefn---s---a----asdy---e---d--
B Proteus_mirabilis                 ------ageft--s---a---a----dfag---e---e--
B Pseudomonas_cepacia               ------v---v--a---m---p----dgag---n---e--
B Pseudomonas_pseudomallei          ------v---a--a---m---p----qgag---s---e--
B Shewanella_amazonensis            -----------------s---h----ssss---g---s--
B Shewanella_putrefaciens           ------s---a--l---a---s----sas----d---d--
B Streptomyces_avermitilis          aavtsaa---a--a---t---d----dta----k---t--
B Vibrio_alginolyticus              ------a---l--a--------------ea---p---e--
B Vibrio_angustum                   ------p---v--t---e---g----d-qv---d---e--
B Vibrio_cholerae                   ------e---n--mqlia---e----tssa---a---d--
B Vibrio_fischeri                   ------a---e--e---k---p----e------t---d--
B Vibrio_parahaemolyticus           ------p------a---q---p----eapa---a---g--
B Vibrio_splendidus                 -----------------t---p----avle---e---k--
B Vibrio_vulnificus                 ------p---a--n---i---n----desa---e---l--
B Yersinia_enterocolitica           ------g---n--g---e---q----pvvt---a---t--
B Cupriavidus_metallidurans-Q1LR74  ------p---l--n---t---v----agap---a---e--
B Cupriavidus_metallidurans-RECA    ------p---l--n---t---v----agap---a---e--
B Erwinia_carotovora-RECA           -----------------a---g----efts---a---a--
B Erwinia_carotovora-RECA_ERWCT     -----------------g---n----elkp---a---a--
B Listeria_monocytogenes-RECA       -----------------i---d----gsskepld---e--
B Listeria_monocytogenes-RECA_LISMF -----------------i---d----gsnkepld---e--
B Neisseria_gonorrhoeae-RECA        ------m---h--i---t--------egtq---d---e--
B Neisseria_gonorrhoeae-RECA_VAR    ------m---h--i---t--------egtq---d---e--
B Salmonella_typhi-RECA             ------q---n--a---t---p----dfav---d---d--
B Salmonella_typhi-RECA_SALPA       ------q---n--a---t---p----dfav---d---d--
B Streptomyces_coelicolor-RECA      ------v---h--p---e---e----sat----epgad--
B Streptomyces_coelicolor-RECA_STRL ------v---h--p---e---e----sat----epgad--
B Xylella_fastidiosa-RECA           ------e---l--s---r---e----egde---d---t--
B Xylella_fastidiosa-RECA_XYLFT     ------e---l--s---r---e----egde---d---t--
B Yersinia_pestis-RECA              ------g---n--g---e---q----pvaa---a---t--
B Yersinia_pestis-RECA_YERPS        ------g---n--g---e---q----pvaa---a---t--
B Mycobacterium_tuberculosis-RECA   ------a---v--v---t---d----dps----n---d--
B Mycobacterium_tuberculosis-RECA_M ------a---v--v---t---d----dls----d---d--
B Neisseria_meningitidis-RECA       ------m---h--i---t--------egtq---d---e--
B Neisseria_meningitidis-RECA_NEIMA ------m---h--i---t--------egtq---d---e--
B Neisseria_meningitidis-RECA_VAR   ------m---h--i---t--------egtq---d---e--
B Xanthomonas_vasicola-RECA_XANAC   -----------------p---a----eapr---e---a--
B Xanthomonas_vasicola-RECA_XANCP   -----------------p---a----eapr---e---a--
B Xanthomonas_vasicola-YP_201580    -----------------p---a----eapr---e---a--
B Pseudomonas_aeruginosa-Q48F94     ------g---v--d---t---k----avgs---r---eaa
B Pseudomonas_aeruginosa-RECA       ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEF5 ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEFL ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPK ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPU ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSESM ----------------------------------------
============================================================================
B DEINOCOCCUS_RADIODURANS           ------nageap---------------ala---p---a--
B Deinococcus_geothermalis          -------egrdp----------------ia---a---v--
B Thermus_aquaticus-RECA            ------eradkv---------------vla----------
B Thermus_aquaticus-RECA_THET2      ------eragev---------------vla----------
B Thermus_aquaticus-RECA_THET8      ------ersdqv---------------vla----------
B Thermus_aquaticus-RECA_THETH      ------ersdqv---------------vla----------
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                                           730       740       750       760
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS               ----------------------------------------
A Archaeoglobus_fulgidus            ----------------------------------------
A Pyrococcus_abyssi                 ----------------------------------------
============================================================================
A METHANOCOCCUS_VOLTAE              ----------------------------------------
A Methanococcus_jannaschii          ----------------------------------------
A Methanococcus_maripaludis         ----------------------------------------
============================================================================
A SULFOLOBUS_SOLFATARICUS           ----------------------------------------
A Desulfurococcus_amylolyticus      ----------------------------------------
A Sulfolobus_acidocaldarius         ----------------------------------------
A Sulfolobus_tokodaii               ----------------------------------------
A Aeropyrum_pernix-RADA             ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH3     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB1     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB2     ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB6     ----------------------------------------
============================================================================
* HUMAN                             ----------------------------------------
* S_CEREVISIAE                      ----------------------------------------
* Apis_mellifera                    ----------------------------------------
* Aspergillus_flavus                ----------------------------------------
* Aspergillus_fumigatus             ----------------------------------------
* Bovine                            ----------------------------------------
* C_elegans                         ----------------------------------------
* Candida_albicans                  ----------------------------------------
* Candida_glabrata                  ----------------------------------------
* Canis_lupus                       ----------------------------------------
* Chaetomium_globosum               ----------------------------------------
* Coccidioides_immitis              ----------------------------------------
* Coprinus_cinereus                 ----------------------------------------
* Cricetulus_griseus                ----------------------------------------
* Cryptococcus_neoformans           ----------------------------------------
* Danio_rerio                       ----------------------------------------
* Debaryomyces_hansenii             ----------------------------------------
* D_melanogaster                    ----------------------------------------
* D_pseudoobscura                   ----------------------------------------
* Emericella_nidulans               ----------------------------------------
* Encephalitozoon_cuniculi          ----------------------------------------
* Eremothecium_gossypii             ----------------------------------------
* Chicken                           ----------------------------------------
* Gibberella_zeae                   ----------------------------------------
* Kluyveromyces_lactis              ----------------------------------------
* Mouse                             ----------------------------------------
* Neurospora_crassa                 ----------------------------------------
* Rabbit                            ----------------------------------------
* Pichia_angusta                    ----------------------------------------
* Rat                               ----------------------------------------
* Schizosaccharomyces_pombe         ----------------------------------------
* Strongylocentrotus_purpuratus     ----------------------------------------
* Tetraodon_nigroviridis            ----------------------------------------
* Tribolium_castaneum               ----------------------------------------
* Ustilago_maydis                   ----------------------------------------
* X_tropicalis                      ----------------------------------------
* Yarrowia_lipolytica               ----------------------------------------
* X_laevis-RA51A                    ----------------------------------------
* X_laevis-RA51B                    ----------------------------------------
  Cryptosporidium_hominis           ----------------------------------------
  Cryptosporidium_parvum            ----------------------------------------
  Dictyostelium_discoideum          ----------------------------------------
  Entamoeba_histolytica             ----------------------------------------
  Leishmania_donovani               ----------------------------------------
  Leishmania_tropica                ----------------------------------------
  Plasmodium_berghei                ----------------------------------------
  Plasmodium_falciparum             ----------------------------------------
  Tetrahymena_thermophila           ----------------------------------------
  Theileria_annulata                ----------------------------------------
  Theileria_parva                   ----------------------------------------
  Trypanosoma_brucei                ----------------------------------------
  Trypanosoma_cruzi                 ----------------------------------------
P Arabidopsis_thaliana              ----------------------------------------
P Oryza_sativa                      ----------------------------------------
P Maize-R51A1                       ----------------------------------------
P Maize-R51A2                       ----------------------------------------
============================================================================
B E_COLI                            -s---------e---gv-----a--e-tn-e-----df--
B MYCOBACTERIUM_SMEGMATIS           -a---------d---dv-----l--p-ap-v-----df--
B MYCOBACTERIUM_TUBERCULOSIS        ---------------gv-----l--p-ap-v-----df--
B Acinetobacter_calcoaceticus       -t---------e---ee-----p--d-ll-e-----s---
B Actinobacillus_pleuropneumoniae   -a---------d---dv-----n--dfed-e-----af-n
B Actinobacillus_succinogenes       -s---------g---kn-----t--e-ld-dsedtvnf--
B Actinomyces_bovis                 ---------------da-----a--e-vp-a-----df--
B Azotobacter_vinelandii            -e---------p----------a--d-ad-l-----dy--
B Bacillus_clausii                  ---------------af-----e--d-vp-l-----dl--
B Bacillus_halodurans               ---------------ef-----e--d-lp-l-----dl--
B Bacillus_licheniformis            -e---------d---ea-----q--aqee-l-----ef--
B Bacillus_megaterium               ---------------d---------q-gd-l-----ni--
B Bacillus_subtilis                 -t---------q---ee-----l--e-fe-e---------
B Bordetella_pertussis              -g---------e----------------------------
B Burkholderia_fungorum             -s---------a---ev-----a--d-ee-e---------
B Chromobacterium_violaceum         ---------------ef-----a--d-da-f-----da--
B Clostridium_acetobutylicum        ---------------kg-----t--e-nn-t-----k---
B Clostridium_thermocellum          -d---------d---ev-----d--l-ed-e-----e---
B Colwellia_psychrerythraea         -k---------s---ev-----k--e-ke-k-----a---
B Corynebacterium_efficiens         ---------------pv-----e--l-ipnv-----dfdd
B Desulfotalea_psychrophila         -r---------e---et---aqi--p-dt-e-----kt--
B Enterococcus_faecalis             -a---------e---gq-----e--e-lp-l-----de--
B Haemophilus_ducreyi               -e---------s---df-----d--e-af-e-----eq--
B Haemophilus_influenzae            -s---------e---nn-----t--e-se-s-----df--
B Histophilus_somni                 -e---------s---ni-----s--e-ve-s-----df--
B Kineococcus_radiotolerans         -e---------e---kv-------------------df--
B Leifsonia_xyli                    -aeptaaagsle---ek-----l--p-ar-k-----ga--
B Mannheimia_succiniciproducens     -i---------e---tn-----s--e-ek-e-----df--
B Nitrosomonas_europaea             -s---------r---vv-----p--p-ss-g-----e---
B Nitrosomonas_eutropha             ---------------tv-----p--p-sp-s-----e---
B Oceanobacillus_iheyensis          ---------------ea-----s--q-es-l-----dl--
B Pasteurella_multocida             -n---------e---ss-----t--g-le-a-----dy--
B Photobacterium_profundum          -k---------s---gsk----k--d-ea-e-----al--
B Photorhabdus_luminescens          -n---------e---ne-----e--m-nn-e-----ef--
B Proteus_mirabilis                 -s---------d---sd-----a--d-dt-k-----e---
B Pseudomonas_cepacia               -a---------e---am-----d--e-ee-----------
B Pseudomonas_pseudomallei          -a---------e---im-----d--e-ee-----------
B Shewanella_amazonensis            -a---------d---ev-----e-gd-en-i-----df-e
B Shewanella_putrefaciens           ---------------dn-----v--e-gn-i-----dl-e
B Streptomyces_avermitilis          ---------------vs-----a--p-aa-k-----tt--
B Vibrio_alginolyticus              -a---------g---ea-----p--e-qa-e-----ef--
B Vibrio_angustum                   -k---------n---sd-----i--e-ed-e-----af--
B Vibrio_cholerae                   -d---------v---ef-----g--a-vp-e-----ef--
B Vibrio_fischeri                   -a---------a---pe-----i--e-en-e-----ef--
B Vibrio_parahaemolyticus           -e---------k----------p--e-qe-e-----ef--
B Vibrio_splendidus                 -g---------a---ek-----e--e-en-e-----el--
B Vibrio_vulnificus                 -v---------e---em-----p--e--q-e-----ef--
B Yersinia_enterocolitica           va---------d---et-----d--e-ts-e-----ef--
B Cupriavidus_metallidurans-Q1LR74  -v---------e---g------------------------
B Cupriavidus_metallidurans-RECA    -v---------e---g------------------------
B Erwinia_carotovora-RECA           -a---------g---nshderdfcge-gk-e-----ef--
B Erwinia_carotovora-RECA_ERWCT     -a---------g---nshdedelage-gk-e-----ef--
B Listeria_monocytogenes-RECA       -k---------e---et-----l--s-ll-d-----de--
B Listeria_monocytogenes-RECA_LISMF -g---------e---et-----l--s-ll-d-----de--
B Neisseria_gonorrhoeae-RECA        -t---------d---g---------e-rp-e-----e---
B Neisseria_gonorrhoeae-RECA_VAR    -t---------d---g---------e-rp-e-----e---
B Salmonella_typhi-RECA             -s---------e---gv-----a--e-tn-e-----df--
B Salmonella_typhi-RECA_SALPA       -s---------e---gv-----a--e-tn-e-----df--
B Streptomyces_coelicolor-RECA      ---------------aa-----s--a-ap-a-----da--
B Streptomyces_coelicolor-RECA_STRL ---------------aa-----s--a-ap-a-----da--
B Xylella_fastidiosa-RECA           -l---------e---dt-----m-----------------
B Xylella_fastidiosa-RECA_XYLFT     -l---------e---da-----m-----------------
B Yersinia_pestis-RECA              -a---------efadga-----d--e-tn-e-----ef--
B Yersinia_pestis-RECA_YERPS        -a---------efadgv-----d--e-tn-e-----ef--
B Mycobacterium_tuberculosis-RECA   ---------------gv-----l--p-ap-v-----df--
B Mycobacterium_tuberculosis-RECA_M ---------------gv-----l--p-ap-v-----df--
B Neisseria_meningitidis-RECA       -t---------d---g---------e-rp-e-----e---
B Neisseria_meningitidis-RECA_NEIMA -t---------d---g---------e-rp-e-----e---
B Neisseria_meningitidis-RECA_VAR   -t---------d---g---------e-rp-e-----e---
B Xanthomonas_vasicola-RECA_XANAC   -g---------d---de-----d--k-e------------
B Xanthomonas_vasicola-RECA_XANCP   -g---------e---te-----s--e-e------------
B Xanthomonas_vasicola-YP_201580    -g---------d---de-----e--k-e------------
B Pseudomonas_aeruginosa-Q48F94     va---------d---dm-----a--e-ad-a-----di--
B Pseudomonas_aeruginosa-RECA       ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEF5 ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEFL ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPK ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPU ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSESM ----------------------------------------
============================================================================
B DEINOCOCCUS_RADIODURANS           -paapeaae---------------------a---------
B Deinococcus_geothermalis          -petpalae-------------------------------
B Thermus_aquaticus-RECA            --ageeege-------------------------------
B Thermus_aquaticus-RECA_THET2      --agedege-------------------------------
B Thermus_aquaticus-RECA_THET8      --agedege-------------------------------
B Thermus_aquaticus-RECA_THETH      --agedege-------------------------------
============================================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                                           770       780       790       800
                                    ----:----|----:----|----:----|----:----|
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxx
===========================================================
A PYROCOCCUS_FURIOSUS               -----------------------
A Archaeoglobus_fulgidus            -----------------------
A Pyrococcus_abyssi                 -----------------------
===========================================================
A METHANOCOCCUS_VOLTAE              -----------------------
A Methanococcus_jannaschii          -----------------------
A Methanococcus_maripaludis         -----------------------
===========================================================
A SULFOLOBUS_SOLFATARICUS           -----------------------
A Desulfurococcus_amylolyticus      -----------------------
A Sulfolobus_acidocaldarius         -----------------------
A Sulfolobus_tokodaii               -----------------------
A Aeropyrum_pernix-RADA             -----------------------
A Aeropyrum_pernix-RADA_VAR_OH1     -----------------------
A Aeropyrum_pernix-RADA_VAR_OH2     -----------------------
A Aeropyrum_pernix-RADA_VAR_OH3     -----------------------
A Aeropyrum_pernix-RADA_VAR_TB1     -----------------------
A Aeropyrum_pernix-RADA_VAR_TB2     -----------------------
A Aeropyrum_pernix-RADA_VAR_TB6     -----------------------
===========================================================
* HUMAN                             -----------------------
* S_CEREVISIAE                      -----------------------
* Apis_mellifera                    -----------------------
* Aspergillus_flavus                -----------------------
* Aspergillus_fumigatus             -----------------------
* Bovine                            -----------------------
* C_elegans                         -----------------------
* Candida_albicans                  -----------------------
* Candida_glabrata                  -----------------------
* Canis_lupus                       -----------------------
* Chaetomium_globosum               -----------------------
* Coccidioides_immitis              -----------------------
* Coprinus_cinereus                 -----------------------
* Cricetulus_griseus                -----------------------
* Cryptococcus_neoformans           -----------------------
* Danio_rerio                       -----------------------
* Debaryomyces_hansenii             -----------------------
* D_melanogaster                    -----------------------
* D_pseudoobscura                   -----------------------
* Emericella_nidulans               -----------------------
* Encephalitozoon_cuniculi          -----------------------
* Eremothecium_gossypii             -----------------------
* Chicken                           -----------------------
* Gibberella_zeae                   -----------------------
* Kluyveromyces_lactis              -----------------------
* Mouse                             -----------------------
* Neurospora_crassa                 -----------------------
* Rabbit                            -----------------------
* Pichia_angusta                    -----------------------
* Rat                               -----------------------
* Schizosaccharomyces_pombe         -----------------------
* Strongylocentrotus_purpuratus     -----------------------
* Tetraodon_nigroviridis            -----------------------
* Tribolium_castaneum               -----------------------
* Ustilago_maydis                   -----------------------
* X_tropicalis                      -----------------------
* Yarrowia_lipolytica               -----------------------
* X_laevis-RA51A                    -----------------------
* X_laevis-RA51B                    -----------------------
  Cryptosporidium_hominis           -----------------------
  Cryptosporidium_parvum            -----------------------
  Dictyostelium_discoideum          -----------------------
  Entamoeba_histolytica             -----------------------
  Leishmania_donovani               -----------------------
  Leishmania_tropica                -----------------------
  Plasmodium_berghei                -----------------------
  Plasmodium_falciparum             -----------------------
  Tetrahymena_thermophila           -----------------------
  Theileria_annulata                -----------------------
  Theileria_parva                   -----------------------
  Trypanosoma_brucei                -----------------------
  Trypanosoma_cruzi                 -----------------------
P Arabidopsis_thaliana              -----------------------
P Oryza_sativa                      -----------------------
P Maize-R51A1                       -----------------------
P Maize-R51A2                       -----------------------
===========================================================
B E_COLI                            -----------------------
B MYCOBACTERIUM_SMEGMATIS           -----------------------
B MYCOBACTERIUM_TUBERCULOSIS        -----------------------
B Acinetobacter_calcoaceticus       -----------------------
B Actinobacillus_pleuropneumoniae   eeel-------------------
B Actinobacillus_succinogenes       --e--------------------
B Actinomyces_bovis                 -----------------------
B Azotobacter_vinelandii            -----------------------
B Bacillus_clausii                  k----------------------
B Bacillus_halodurans               k----------------------
B Bacillus_licheniformis            -----------------------
B Bacillus_megaterium               -----------------------
B Bacillus_subtilis                 -----------------------
B Bordetella_pertussis              -----------------------
B Burkholderia_fungorum             -----------------------
B Chromobacterium_violaceum         -----------------------
B Clostridium_acetobutylicum        -----------------------
B Clostridium_thermocellum          -----------------------
B Colwellia_psychrerythraea         -----------------------
B Corynebacterium_efficiens         edddfdastapagtftevtten-
B Desulfotalea_psychrophila         -kdv-------------------
B Enterococcus_faecalis             -----------------------
B Haemophilus_ducreyi               --e--------------------
B Haemophilus_influenzae            --e--------------------
B Histophilus_somni                 -----------------------
B Kineococcus_radiotolerans         -----------------------
B Leifsonia_xyli                    -----------------------
B Mannheimia_succiniciproducens     --e--------------------
B Nitrosomonas_europaea             -----------------------
B Nitrosomonas_eutropha             -----------------------
B Oceanobacillus_iheyensis          k----------------------
B Pasteurella_multocida             -----------------------
B Photobacterium_profundum          --k--------------------
B Photorhabdus_luminescens          -----------------------
B Proteus_mirabilis                 -----------------------
B Pseudomonas_cepacia               -----------------------
B Pseudomonas_pseudomallei          -----------------------
B Shewanella_amazonensis            tgevf------------------
B Shewanella_putrefaciens           tgevf------------------
B Streptomyces_avermitilis          -----kskaaaaks---------
B Vibrio_alginolyticus              -----------------------
B Vibrio_angustum                   -----------------------
B Vibrio_cholerae                   -----------------------
B Vibrio_fischeri                   -----------------------
B Vibrio_parahaemolyticus           -----------------------
B Vibrio_splendidus                 -----------------------
B Vibrio_vulnificus                 -----------------------
B Yersinia_enterocolitica           -----------------------
B Cupriavidus_metallidurans-Q1LR74  -----------------------
B Cupriavidus_metallidurans-RECA    -----------------------
B Erwinia_carotovora-RECA           -----------------------
B Erwinia_carotovora-RECA_ERWCT     -----------------------
B Listeria_monocytogenes-RECA       -----------------------
B Listeria_monocytogenes-RECA_LISMF -----------------------
B Neisseria_gonorrhoeae-RECA        -----------------------
B Neisseria_gonorrhoeae-RECA_VAR    -----------------------
B Salmonella_typhi-RECA             -----------------------
B Salmonella_typhi-RECA_SALPA       -----------------------
B Streptomyces_coelicolor-RECA      -apavpapttakatkskataaks
B Streptomyces_coelicolor-RECA_STRL -apavpapttakatkskaaaaks
B Xylella_fastidiosa-RECA           -----------------------
B Xylella_fastidiosa-RECA_XYLFT     -----------------------
B Yersinia_pestis-RECA              -----------------------
B Yersinia_pestis-RECA_YERPS        -----------------------
B Mycobacterium_tuberculosis-RECA   -----------------------
B Mycobacterium_tuberculosis-RECA_M -----------------------
B Neisseria_meningitidis-RECA       -----------------------
B Neisseria_meningitidis-RECA_NEIMA -----------------------
B Neisseria_meningitidis-RECA_VAR   -----------------------
B Xanthomonas_vasicola-RECA_XANAC   -----------------------
B Xanthomonas_vasicola-RECA_XANCP   -----------------------
B Xanthomonas_vasicola-YP_201580    -----------------------
B Pseudomonas_aeruginosa-Q48F94     -----------------------
B Pseudomonas_aeruginosa-RECA       -----------------------
B Pseudomonas_aeruginosa-RECA_PSEF5 -----------------------
B Pseudomonas_aeruginosa-RECA_PSEFL -----------------------
B Pseudomonas_aeruginosa-RECA_PSEPK -----------------------
B Pseudomonas_aeruginosa-RECA_PSEPU -----------------------
B Pseudomonas_aeruginosa-RECA_PSESM -----------------------
===========================================================
B DEINOCOCCUS_RADIODURANS           -----------------------
B Deinococcus_geothermalis          -----------------------
B Thermus_aquaticus-RECA            -----------------------
B Thermus_aquaticus-RECA_THET2      -----------------------
B Thermus_aquaticus-RECA_THET8      -----------------------
B Thermus_aquaticus-RECA_THETH      -----------------------
===========================================================
  Consensus                         xxxxxxxxxxxxxxxxxxxxxxx

  

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