90 100 110 120
----:----|----:----|----:----|----:----|
Consensus xxxxxxxxxxxxxxxxxxxxxxxxxxxxxdxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS --------------------kii-r-si------------
A Archaeoglobus_fulgidus --------------------kii---el------------
A Pyrococcus_abyssi --------------------kei-r-ti------------
============================================================================
A METHANOCOCCUS_VOLTAE -----------------------l--td------------
A Methanococcus_jannaschii -----------------------l--tq------------
A Methanococcus_maripaludis -----------------------l--te------------
============================================================================
A SULFOLOBUS_SOLFATARICUS -----------------------n--ik------------
A Desulfurococcus_amylolyticus -----------------------g--fi------------
A Sulfolobus_acidocaldarius -----------------------k--vk------------
A Sulfolobus_tokodaii -----------------------k--vk------------
A Aeropyrum_pernix-RADA -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_OH1 -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_OH2 -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_OH3 -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_TB1 -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_TB2 -----------------------e--ik------------
A Aeropyrum_pernix-RADA_VAR_TB6 -----------------------e--ik------------
============================================================================
* HUMAN ------------------------a---mqmql-ean-a-
* S_CEREVISIAE gngngssedieatngsgdgg----g---lqeqa-eaq-ge
* Apis_mellifera -------------------s----a---masta-slq-gd
* Aspergillus_flavus ------------------------t---aDmdt-qne-y-
* Aspergillus_fumigatus ------------------------t---aDlet-qne-y-
* Bovine ------------------------a---mqmql-ean-a-
* C_elegans ------------------------a---dqall-naa-i-
* Candida_albicans ------------------------s---hpqni-nad-a-
* Candida_glabrata -----------stnrsmdynsge-q---lfhqe-qye-eg
* Canis_lupus ------------------------a---mqmql-ean-a-
* Chaetomium_globosum ------------------------a---gheeydesg-s-
* Coccidioides_immitis ------------------------g---aEael-dgy-e-
* Coprinus_cinereus ------------------------s---qgydg-sqi-p-
* Cricetulus_griseus ------------------------a---mqmql-ean-a-
* Cryptococcus_neoformans ------------sreqeqdp----f---vNqhg-e----e
* Danio_rerio -----------------------------amrn-asr-ve
* Debaryomyces_hansenii ------------------------e---gaqtn-ehe-a-
* D_melanogaster -----------------------------Eklt-nvq-aq
* D_pseudoobscura -----------------------------------da-l-
* Emericella_nidulans ------------------------t---aDmet-qne-f-
* Encephalitozoon_cuniculi ------------------------s---eEyqy-q-----
* Eremothecium_gossypii ------------------------v---iEvha-esg-r-
* Chicken ------------------------a---mqvqf-eas-t-
* Gibberella_zeae ------------------------s---qEhde-sqm-g-
* Kluyveromyces_lactis -----teeqme-------------d---vqqri-qet-df
* Mouse ------------------------a---mqmql-eas-a-
* Neurospora_crassa ------------------------n---eEyde-sanme-
* Rabbit ------------------------a---mqmql-ean-a-
* Pichia_angusta ------------------------v---gEqel-sag-y-
* Rat ------------------------a---mqmql-ean-a-
* Schizosaccharomyces_pombe ------------------------q---sNyey-dvn-v-
* Strongylocentrotus_purpuratus ------------------------a---mqmh----n-a-
* Tetraodon_nigroviridis ------------------------a---maaev-rgq-a-
* Tribolium_castaneum --------------------------------e-asl-as
* Ustilago_maydis ------------------------s---qNaqd-paq-i-
* X_tropicalis ------------------------a---mqahy-eae-a-
* Yarrowia_lipolytica ----------------------------------------
* X_laevis-RA51A ------------------------a---mqahy-eae-a-
* X_laevis-RA51B ------------------------a---mqahy-qae-a-
Cryptosporidium_hominis ------------------------p---nEvvn-enn-e-
Cryptosporidium_parvum ------------------------p---nEivn-enn-e-
Dictyostelium_discoideum ------------------------e---eEvdi-ene-q-
Entamoeba_histolytica ------------------------k---vNeee-hee-e-
Leishmania_donovani ------------------------e---pqqpq-qqq-s-
Leishmania_tropica ------------------------e---pqqqq-qqq-s-
Plasmodium_berghei ------------------------a---kEdti-sqt-c-
Plasmodium_falciparum ----------kqantkedks----q---kisns-sti-de
Tetrahymena_thermophila -----------------------------------ae-y-
Theileria_annulata ------------------------e---lslvk-een-s-
Theileria_parva ------------------------e---lslvk-een-s-
Trypanosoma_brucei ------------------------f---dDaav-dav-n-
Trypanosoma_cruzi ------------------------p---eqqqq-qqe-d-
P Arabidopsis_thaliana ------------------------t---tmeqr-rnq-na
P Oryza_sativa ------------------------s---tsaaa-aaa-a-
P Maize-R51A1 -----------------ssa----a---qqqqk-aaa-ae
P Maize-R51A2 -----------------sss----s---ahqka-spp-ie
============================================================================
B E_COLI ------------------------d---eN----------
B MYCOBACTERIUM_SMEGMATIS ------------------------a---pD----------
B MYCOBACTERIUM_TUBERCULOSIS ------------------------a---pD----------
B Acinetobacter_calcoaceticus ------------------------d---dN----------
B Actinobacillus_pleuropneumoniae ------------------------dp--eq----------
B Actinobacillus_succinogenes ------------------------a---eE----------
B Actinomyces_bovis ------------------------a---yD----------
B Azotobacter_vinelandii ------------------------d---eN----------
B Bacillus_clausii ----------------------------sD----------
B Bacillus_halodurans ----------------------------sD----------
B Bacillus_licheniformis ----------------------------sD----------
B Bacillus_megaterium ----------------------------nD----------
B Bacillus_subtilis ----------------------------sD----------
B Bordetella_pertussis ------------------------a---aE----------
B Burkholderia_fungorum ------------------------t---aE----------
B Chromobacterium_violaceum ------------------------s---eD----------
B Clostridium_acetobutylicum ------------------------d---nE----------
B Clostridium_thermocellum ------------------------e---------------
B Colwellia_psychrerythraea ------------------------k---dD----------
B Corynebacterium_efficiens ------------------------g---dD----------
B Desulfotalea_psychrophila ------------------------a---kD----------
B Enterococcus_faecalis ------------------------a---bD----------
B Haemophilus_ducreyi ------------------------dp--eq----------
B Haemophilus_influenzae ------------------------q---eE----------
B Histophilus_somni ------------------------p---eE----------
B Kineococcus_radiotolerans ------------------------p---aD----------
B Leifsonia_xyli ------------------------p---aD----------
B Mannheimia_succiniciproducens ------------------------n---dE----------
B Nitrosomonas_europaea ------------------------d---eN----------
B Nitrosomonas_eutropha ------------------------d---eN----------
B Oceanobacillus_iheyensis ----------------------------sD----------
B Pasteurella_multocida ------------------------k---eE----------
B Photobacterium_profundum ------------------------d---dN----------
B Photorhabdus_luminescens ------------------------d---eN----------
B Proteus_mirabilis ------------------------d---eN----------
B Pseudomonas_cepacia ------------------------t---aE----------
B Pseudomonas_pseudomallei ------------------------t---aE----------
B Shewanella_amazonensis ------------------------d---pN----------
B Shewanella_putrefaciens ------------------------d---pN----------
B Streptomyces_avermitilis ------------------------g---tD----------
B Vibrio_alginolyticus ------------------------d---eN----------
B Vibrio_angustum ------------------------d---dN----------
B Vibrio_cholerae ------------------------d---eN----------
B Vibrio_fischeri ------------------------d---dN----------
B Vibrio_parahaemolyticus ------------------------d---eN----------
B Vibrio_splendidus ------------------------d---eN----------
B Vibrio_vulnificus ------------------------d---eN----------
B Yersinia_enterocolitica ------------------------d---eN----------
B Cupriavidus_metallidurans-Q1LR74 ------------------------s---aE----------
B Cupriavidus_metallidurans-RECA ------------------------s---aE----------
B Erwinia_carotovora-RECA ------------------------d---eN----------
B Erwinia_carotovora-RECA_ERWCT ------------------------d---eN----------
B Listeria_monocytogenes-RECA ----------------------------nD----------
B Listeria_monocytogenes-RECA_LISMF ----------------------------nD----------
B Neisseria_gonorrhoeae-RECA ------------------------s---dD----------
B Neisseria_gonorrhoeae-RECA_VAR ------------------------s---dD----------
B Salmonella_typhi-RECA ------------------------d---eN----------
B Salmonella_typhi-RECA_SALPA ------------------------d---eN----------
B Streptomyces_coelicolor-RECA ------------------------g---tD----------
B Streptomyces_coelicolor-RECA_STRL ------------------------g---tD----------
B Xylella_fastidiosa-RECA ------------------------d---eN----------
B Xylella_fastidiosa-RECA_XYLFT ------------------------d---eN----------
B Yersinia_pestis-RECA ------------------------d---eN----------
B Yersinia_pestis-RECA_YERPS ------------------------d---eN----------
B Mycobacterium_tuberculosis-RECA ------------------------t---pD----------
B Mycobacterium_tuberculosis-RECA_M ------------------------a---pD----------
B Neisseria_meningitidis-RECA ------------------------s---dD----------
B Neisseria_meningitidis-RECA_NEIMA ------------------------s---dD----------
B Neisseria_meningitidis-RECA_VAR ------------------------s---dD----------
B Xanthomonas_vasicola-RECA_XANAC ------------------------d---eN----------
B Xanthomonas_vasicola-RECA_XANCP ------------------------d---eN----------
B Xanthomonas_vasicola-YP_201580 ------------------------d---eN----------
B Pseudomonas_aeruginosa-Q48F94 ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA ------------------------d---eN----------
B Pseudomonas_aeruginosa-RECA_PSEF5 ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA_PSEFL ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA_PSEPK ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA_PSEPU ------------------------d---dN----------
B Pseudomonas_aeruginosa-RECA_PSESM ------------------------d---dN----------
============================================================================
B DEINOCOCCUS_RADIODURANS -----------------------a--ke------------
B Deinococcus_geothermalis -----------------------s--ke------------
B Thermus_aquaticus-RECA -----------------------e--en------------
B Thermus_aquaticus-RECA_THET2 -----------------------d--es------------
B Thermus_aquaticus-RECA_THET8 -----------------------d--es------------
B Thermus_aquaticus-RECA_THETH -----------------------d--es------------
============================================================================
Consensus xxxxxxxxxxxxxxxxxxxxxxxxxxxxxdxxxxxxxxxx
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