730 740 750 760
----:----|----:----|----:----|----:----|
Consensus xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
============================================================================
A PYROCOCCUS_FURIOSUS ----------------------------------------
A Archaeoglobus_fulgidus ----------------------------------------
A Pyrococcus_abyssi ----------------------------------------
============================================================================
A METHANOCOCCUS_VOLTAE ----------------------------------------
A Methanococcus_jannaschii ----------------------------------------
A Methanococcus_maripaludis ----------------------------------------
============================================================================
A SULFOLOBUS_SOLFATARICUS ----------------------------------------
A Desulfurococcus_amylolyticus ----------------------------------------
A Sulfolobus_acidocaldarius ----------------------------------------
A Sulfolobus_tokodaii ----------------------------------------
A Aeropyrum_pernix-RADA ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH1 ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH2 ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_OH3 ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB1 ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB2 ----------------------------------------
A Aeropyrum_pernix-RADA_VAR_TB6 ----------------------------------------
============================================================================
* HUMAN ----------------------------------------
* S_CEREVISIAE ----------------------------------------
* Apis_mellifera ----------------------------------------
* Aspergillus_flavus ----------------------------------------
* Aspergillus_fumigatus ----------------------------------------
* Bovine ----------------------------------------
* C_elegans ----------------------------------------
* Candida_albicans ----------------------------------------
* Candida_glabrata ----------------------------------------
* Canis_lupus ----------------------------------------
* Chaetomium_globosum ----------------------------------------
* Coccidioides_immitis ----------------------------------------
* Coprinus_cinereus ----------------------------------------
* Cricetulus_griseus ----------------------------------------
* Cryptococcus_neoformans ----------------------------------------
* Danio_rerio ----------------------------------------
* Debaryomyces_hansenii ----------------------------------------
* D_melanogaster ----------------------------------------
* D_pseudoobscura ----------------------------------------
* Emericella_nidulans ----------------------------------------
* Encephalitozoon_cuniculi ----------------------------------------
* Eremothecium_gossypii ----------------------------------------
* Chicken ----------------------------------------
* Gibberella_zeae ----------------------------------------
* Kluyveromyces_lactis ----------------------------------------
* Mouse ----------------------------------------
* Neurospora_crassa ----------------------------------------
* Rabbit ----------------------------------------
* Pichia_angusta ----------------------------------------
* Rat ----------------------------------------
* Schizosaccharomyces_pombe ----------------------------------------
* Strongylocentrotus_purpuratus ----------------------------------------
* Tetraodon_nigroviridis ----------------------------------------
* Tribolium_castaneum ----------------------------------------
* Ustilago_maydis ----------------------------------------
* X_tropicalis ----------------------------------------
* Yarrowia_lipolytica ----------------------------------------
* X_laevis-RA51A ----------------------------------------
* X_laevis-RA51B ----------------------------------------
Cryptosporidium_hominis ----------------------------------------
Cryptosporidium_parvum ----------------------------------------
Dictyostelium_discoideum ----------------------------------------
Entamoeba_histolytica ----------------------------------------
Leishmania_donovani ----------------------------------------
Leishmania_tropica ----------------------------------------
Plasmodium_berghei ----------------------------------------
Plasmodium_falciparum ----------------------------------------
Tetrahymena_thermophila ----------------------------------------
Theileria_annulata ----------------------------------------
Theileria_parva ----------------------------------------
Trypanosoma_brucei ----------------------------------------
Trypanosoma_cruzi ----------------------------------------
P Arabidopsis_thaliana ----------------------------------------
P Oryza_sativa ----------------------------------------
P Maize-R51A1 ----------------------------------------
P Maize-R51A2 ----------------------------------------
============================================================================
B E_COLI -s---------e---gv-----a--e-tn-e-----df--
B MYCOBACTERIUM_SMEGMATIS -a---------d---dv-----l--p-ap-v-----df--
B MYCOBACTERIUM_TUBERCULOSIS ---------------gv-----l--p-ap-v-----df--
B Acinetobacter_calcoaceticus -t---------e---ee-----p--d-ll-e-----s---
B Actinobacillus_pleuropneumoniae -a---------d---dv-----n--dfed-e-----af-n
B Actinobacillus_succinogenes -s---------g---kn-----t--e-ld-dsedtvnf--
B Actinomyces_bovis ---------------da-----a--e-vp-a-----df--
B Azotobacter_vinelandii -e---------p----------a--d-ad-l-----dy--
B Bacillus_clausii ---------------af-----e--d-vp-l-----dl--
B Bacillus_halodurans ---------------ef-----e--d-lp-l-----dl--
B Bacillus_licheniformis -e---------d---ea-----q--aqee-l-----ef--
B Bacillus_megaterium ---------------d---------q-gd-l-----ni--
B Bacillus_subtilis -t---------q---ee-----l--e-fe-e---------
B Bordetella_pertussis -g---------e----------------------------
B Burkholderia_fungorum -s---------a---ev-----a--d-ee-e---------
B Chromobacterium_violaceum ---------------ef-----a--d-da-f-----da--
B Clostridium_acetobutylicum ---------------kg-----t--e-nn-t-----k---
B Clostridium_thermocellum -d---------d---ev-----d--l-ed-e-----e---
B Colwellia_psychrerythraea -k---------s---ev-----k--e-ke-k-----a---
B Corynebacterium_efficiens ---------------pv-----e--l-ipnv-----dfdd
B Desulfotalea_psychrophila -r---------e---et---aqi--p-dt-e-----kt--
B Enterococcus_faecalis -a---------e---gq-----e--e-lp-l-----de--
B Haemophilus_ducreyi -e---------s---df-----d--e-af-e-----eq--
B Haemophilus_influenzae -s---------e---nn-----t--e-se-s-----df--
B Histophilus_somni -e---------s---ni-----s--e-ve-s-----df--
B Kineococcus_radiotolerans -e---------e---kv-------------------df--
B Leifsonia_xyli -aeptaaagsle---ek-----l--p-ar-k-----ga--
B Mannheimia_succiniciproducens -i---------e---tn-----s--e-ek-e-----df--
B Nitrosomonas_europaea -s---------r---vv-----p--p-ss-g-----e---
B Nitrosomonas_eutropha ---------------tv-----p--p-sp-s-----e---
B Oceanobacillus_iheyensis ---------------ea-----s--q-es-l-----dl--
B Pasteurella_multocida -n---------e---ss-----t--g-le-a-----dy--
B Photobacterium_profundum -k---------s---gsk----k--d-ea-e-----al--
B Photorhabdus_luminescens -n---------e---ne-----e--m-nn-e-----ef--
B Proteus_mirabilis -s---------d---sd-----a--d-dt-k-----e---
B Pseudomonas_cepacia -a---------e---am-----d--e-ee-----------
B Pseudomonas_pseudomallei -a---------e---im-----d--e-ee-----------
B Shewanella_amazonensis -a---------d---ev-----e-gd-en-i-----df-e
B Shewanella_putrefaciens ---------------dn-----v--e-gn-i-----dl-e
B Streptomyces_avermitilis ---------------vs-----a--p-aa-k-----tt--
B Vibrio_alginolyticus -a---------g---ea-----p--e-qa-e-----ef--
B Vibrio_angustum -k---------n---sd-----i--e-ed-e-----af--
B Vibrio_cholerae -d---------v---ef-----g--a-vp-e-----ef--
B Vibrio_fischeri -a---------a---pe-----i--e-en-e-----ef--
B Vibrio_parahaemolyticus -e---------k----------p--e-qe-e-----ef--
B Vibrio_splendidus -g---------a---ek-----e--e-en-e-----el--
B Vibrio_vulnificus -v---------e---em-----p--e--q-e-----ef--
B Yersinia_enterocolitica va---------d---et-----d--e-ts-e-----ef--
B Cupriavidus_metallidurans-Q1LR74 -v---------e---g------------------------
B Cupriavidus_metallidurans-RECA -v---------e---g------------------------
B Erwinia_carotovora-RECA -a---------g---nshderdfcge-gk-e-----ef--
B Erwinia_carotovora-RECA_ERWCT -a---------g---nshdedelage-gk-e-----ef--
B Listeria_monocytogenes-RECA -k---------e---et-----l--s-ll-d-----de--
B Listeria_monocytogenes-RECA_LISMF -g---------e---et-----l--s-ll-d-----de--
B Neisseria_gonorrhoeae-RECA -t---------d---g---------e-rp-e-----e---
B Neisseria_gonorrhoeae-RECA_VAR -t---------d---g---------e-rp-e-----e---
B Salmonella_typhi-RECA -s---------e---gv-----a--e-tn-e-----df--
B Salmonella_typhi-RECA_SALPA -s---------e---gv-----a--e-tn-e-----df--
B Streptomyces_coelicolor-RECA ---------------aa-----s--a-ap-a-----da--
B Streptomyces_coelicolor-RECA_STRL ---------------aa-----s--a-ap-a-----da--
B Xylella_fastidiosa-RECA -l---------e---dt-----m-----------------
B Xylella_fastidiosa-RECA_XYLFT -l---------e---da-----m-----------------
B Yersinia_pestis-RECA -a---------efadga-----d--e-tn-e-----ef--
B Yersinia_pestis-RECA_YERPS -a---------efadgv-----d--e-tn-e-----ef--
B Mycobacterium_tuberculosis-RECA ---------------gv-----l--p-ap-v-----df--
B Mycobacterium_tuberculosis-RECA_M ---------------gv-----l--p-ap-v-----df--
B Neisseria_meningitidis-RECA -t---------d---g---------e-rp-e-----e---
B Neisseria_meningitidis-RECA_NEIMA -t---------d---g---------e-rp-e-----e---
B Neisseria_meningitidis-RECA_VAR -t---------d---g---------e-rp-e-----e---
B Xanthomonas_vasicola-RECA_XANAC -g---------d---de-----d--k-e------------
B Xanthomonas_vasicola-RECA_XANCP -g---------e---te-----s--e-e------------
B Xanthomonas_vasicola-YP_201580 -g---------d---de-----e--k-e------------
B Pseudomonas_aeruginosa-Q48F94 va---------d---dm-----a--e-ad-a-----di--
B Pseudomonas_aeruginosa-RECA ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEF5 ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEFL ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPK ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSEPU ----------------------------------------
B Pseudomonas_aeruginosa-RECA_PSESM ----------------------------------------
============================================================================
B DEINOCOCCUS_RADIODURANS -paapeaae---------------------a---------
B Deinococcus_geothermalis -petpalae-------------------------------
B Thermus_aquaticus-RECA --ageeege-------------------------------
B Thermus_aquaticus-RECA_THET2 --agedege-------------------------------
B Thermus_aquaticus-RECA_THET8 --agedege-------------------------------
B Thermus_aquaticus-RECA_THETH --agedege-------------------------------
============================================================================
Consensus xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
This webpage, and all other files in or under this directory (except for those explicitly copyrighted or licensed otherwise), are licensed (copyright 2001-2008) by Allen Smith under a Creative Commons Attribution-ShareAlike 2.5 License; also available is a text version of the Legal Code of the license. (Of course, factual material is not copyrightable - fortunately!)