TATA-Binding Protein (TBP or TF2D)

                                       270       280       290       300       310       320
                                ----:----|----:----|----:----|----:----|----:----|----:----|----:
  Consensus                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
=================================================================================================
A PYRFU                         -----------------------------------------------------------------
A Pyrococcus_abyssi             -----------------------------------------------------------------
=================================================================================================
* HUMAN                         --s----------q-t---l--tta-plp-----g----------ttp----l---y-p------
* S_CEREVISIAE                  --s----------e-e---d--ikr-aap-----e----------sek----d---t-s------
P ARABIDOPSIS_THALIANA          -----------------------------------------------------------------
* 1JFIC_Human                   ----------------------------------------------------------s------
* 1TBPA_S_cerevisiae            -----------------------------------------------------------------
* Anopheles_gambiae             --p----------q-n---miqpqt-pvs-----gldlvvsclllksv----lilsf-s----ap
* Apis_mellifera                --p----------q-tpqnm--msp-lvq-----n----------tnh----i---a-p------
* Aspergillus_flavus            -----------------------------------------------------------------
* Aspergillus_fumigatus         -----------------------------------------------------------------
* Bovine                        --s----------q-t---l--tta-plp-----g----------ttp----l---y-p------
* C_briggsae                    --n----------l-a---i--pmt-playnnfer----------dtl----m---h-p------
* C_elegans                     --nldinppsvayq-n---l--tvp-mtp-----l----------ays----v---ydr------
* Candida_albicans              --e----------d-i---d--epk-qed-----t----------tdg----n---g-g------
* Candida_glabrata              --a----------d-e---d-------------------------ede----d---d-a------
* Canis_lupus                   -----------------------------------------------------------------
* Cryptococcus_neoformans       --t------------------------ld-----g----------egs----l---a-t------
* Danio_rerio                   -----------------------------------------------------------------
* Debaryomyces_hansenii         --e----------e-d---t--sdtivep-----n----------qde----d---d-g------
* D_melanogaster                -----------------------------------------------------------------
* Emericella_nidulans           --a----------n-g---n--vng-qqq-----g----------ana----a---n-g------
* Encephalitozoon_cuniculi      -----------------------------------------------------------------
* Eremothecium_gossypii         --s----------v-v---q---se-skd-----s----------mda----d---h-g------
* Chicken                       --s----------q-t---l--tta-plp-----g----------ttp----l---y-p------
* Gibberella_zeae               -----------------------------------------------------------------
* Kluyveromyces_lactis          --e-----------------------slp-----g----------td------------------
* Macaca_mulatta                --s----------q-t---l--tta-plp-----g----------ttp----l---y-p------
* Mesocricetus_auratus          --s----------q-t---l--tta-plp-----g----------ttp----l---y-p------
* Mouse                         --s----------q-t---l--tta-plp-----g----------ttp----l---y-p------
* Neurospora_crassa             --d----------k-s---a--avn-gai-----g----------aqa----a---n-g------
* Onchocerca_volvulus           -----------------------------------------------------------------
* Petromyzon_marinus            --t----------qgs---s--ttt-alp-----g----------cap----l---y-q------
* Pneumocystis_carinii          --s----------g-a---m--ypg-srd-----e----------kgm----e---h-g------
* Rat                           --s----------q-t---l--tta-plp-----g----------ttp----l---y-p------
* Schizosaccharomyces_pombe     --n----------s-s---l--tfp-vlp-----n----------ann--------e-a------
* Strongylocentrotus_purpuratus --s----------v-g---s--vss-lap-----g----------ssf----i---p-p------
* Tetraodon_nigroviridis        aas----------q-d---s--avc-ldy-----n----------sqd----s---t-g------
* Tribolium_castaneum           --g----------f-a---l--pit-siq-----s----------qtpqhtmm---s-pmvnlgg
* Ustilago_maydis               -----------------------------------------------------------------
* X_laevis                      -----------------------------------------------------------------
* X_tropicalis                  --p----------q-t---l--tta-plp-----g----------ntp----l---y-p------
* Yarrowia_lipolytica           --a----------d-t---s--lig-evk-----r----------eqv----d-----s------
  Dictyostelium_discoideum      -----------------------------------------------------------------
  Tetrahymena_thermophila       -----------------------------------------------------------------
P Glycine_max                   -----------------------------------------------------------------
P Oryza_sativa                  -----------------------------------------------------------------
P Arabidopsis_thaliana-TBP2     -----------------------------------------------------------------
P Maize-TBP1                    -----------------------------------------------------------------
P Maize-TBP1_VAR                -----------------------------------------------------------------
P Maize-TBP2                    -----------------------------------------------------------------
=================================================================================================
  Consensus                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Page 5 of 10


This webpage, and all other files in or under this directory (except for those explicitly copyrighted or licensed otherwise), are licensed (copyright 2001-2008) by Allen Smith under a Creative Commons Attribution-ShareAlike 2.5 License; also available is a text version of the Legal Code of the license. (Of course, factual material is not copyrightable - fortunately!)