analyze.align.clustered.pdbs.10.pl ../analyze.align.clustered.pdbs.10.csv ../analyze.align.clustered.pdbs.10.2.csv ../analyze.align.clustered.pdbs.10.3.csv
Have 1917 chains in clusters
Checking align.clustered.pdbs.output1.bz2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 242, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 242, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 72.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 206.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 213.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 229.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 230.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 231.
Finished reading align.clustered.pdbs.output1.bz2
Checking align.clustered.pdbs.output2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 242, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 242, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 72.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 206.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 213.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 229.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 230.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 231.
Finished reading align.clustered.pdbs.output2
Checking align.clustered.pdbs.output3
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 208.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 224.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 225.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 226.
Finished reading align.clustered.pdbs.output3
Checking align.clustered.pdbs.output4
Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 42.
Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 115.
Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 137.
Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 146.
Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 151.
Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 179.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 196.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 204.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 205.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 206.
Finished reading align.clustered.pdbs.output4
Checking align.clustered.pdbs.output5
Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 36.
Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 109.
Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 131.
Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 140.
Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 146.
Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 174.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 191.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 199.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 200.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 201.
Finished reading align.clustered.pdbs.output5
Checking align.clustered.pdbs.output6
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 191.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 199.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 200.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 201.
Finished reading align.clustered.pdbs.output6
Checking align.clustered.pdbs.output7
Finished reading align.clustered.pdbs.output7
Checking align.clustered.pdbs.output8
Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 120.
Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 286, chunk 122.
Problem with 1NH2B 1NH2C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 147.
Problem with 1NVPB 1NVPC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 155.
Finished reading align.clustered.pdbs.output8
Checking align.clustered.pdbs.2.output1
Finished reading align.clustered.pdbs.2.output1
Checking align.clustered.pdbs.2.output2
Finished reading align.clustered.pdbs.2.output2
Checking align.clustered.pdbs.2.output3
Finished reading align.clustered.pdbs.2.output3
Checking align.clustered.pdbs.2.output4
Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 249.
Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 250.
Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 255.
Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 258.
Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 265.
Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 272.
Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 274.
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 294.
Finished reading align.clustered.pdbs.2.output4
Checking align.clustered.pdbs.2.output5
Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 249.
Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 250.
Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 255.
Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 258.
Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 265.
Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 272.
Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 274.
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 289.
Finished reading align.clustered.pdbs.2.output5
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2
Have 887 chain pairs to check, 438 no-difference, 10 skip-output1, 887 successful1, 790 successful2, 449 failure1, 449 failure2, 37 clusters
EBLOSUM62_P pequiv_diff:
max: 0.8097169999999999999999999999997
mean: 0.06215056712316911926771374317426
EGONNET_P pequiv_diff:
max: 0.4608289999999999999999999999998
mean: 0.002670544982344456222867693163152
EIDENT_P pequiv_diff:
max: 6.349206
mean: 0.9531114931823984261197889749761
ENUSSINOV_P pequiv_diff:
max: 0.9216590000000000000000000000003
mean: 0.06111723772768411695541272344554
EPAM120_P pequiv_diff:
max: 1.333333333333333333333333333334
mean: 0.004183405456200236966249705520807
EBLOSUM62_P successful1:
num: 304
pequiv1 min: 0.9758064516129032258064516129032
id1 min: 0.5724465558194774346793349168646
id4 min: 0.5591647331786542923433874709977
EGONNET_P successful1:
num: 366
pequiv1 min: 0.9758064516129032258064516129032
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EIDENT_P successful1:
num: 47
pequiv1 min: 0.9761904761904761904761904761905
id1 min: 0.6589861751152073732718894009217
id4 min: 0.6507936507936507936507936507937
ENUSSINOV_P successful1:
num: 269
pequiv1 min: 0.9790697674418604651162790697674
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EPAM120_P successful1:
num: 365
pequiv1 min: 0.9758064516129032258064516129032
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EBLOSUM62_P failure1:
num: 145
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
EGONNET_P failure1:
num: 83
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
EIDENT_P failure1:
num: 402
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
ENUSSINOV_P failure1:
num: 180
pequiv1 max: 1
id1 max: 1
id4 max: 1
EPAM120_P failure1:
num: 84
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
EBLOSUM62_P successful2:
num: 687
pequiv1 min: 0.9793103448275862068965517241379
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EGONNET_P successful2:
num: 755
pequiv1 min: 0.9793103448275862068965517241379
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EIDENT_P successful2:
num: 448
pequiv1 min: 0.986013986013986013986013986014
id1 min: 0.6589861751152073732718894009217
id4 min: 0.6589861751152073732718894009217
ENUSSINOV_P successful2:
num: 676
pequiv1 min: 0.9929824561403508771929824561404
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EPAM120_P successful2:
num: 750
pequiv1 min: 0.9793103448275862068965517241379
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EBLOSUM62_P failure2:
num: 148
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
pequiv1 max-below 0.9793103448275862068965517241379: 0.9790697674418604651162790697674
id1 none-below 0.6028368794326241134751773049645
id4 none-below 0.6028368794326241134751773049645
EGONNET_P failure2:
num: 86
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
pequiv1 max-below 0.9793103448275862068965517241379: 0.9790697674418604651162790697674
id1 max-below 0.6028368794326241134751773049645: 0.5748218527315914489311163895487
id4 max-below 0.6028368794326241134751773049645: 0.5614849187935034802784222737819
EIDENT_P failure2:
num: 406
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
pequiv1 max-below 0.986013986013986013986013986014: 0.9857142857142857142857142857143
id1 max-below 0.6589861751152073732718894009217: 0.6588628762541806020066889632107
id4 max-below 0.6589861751152073732718894009217: 0.6578947368421052631578947368421
ENUSSINOV_P failure2:
num: 182
pequiv1 max: 1
id1 max: 1
id4 max: 1
pequiv1 max-below 0.9929824561403508771929824561404: 0.9900332225913621262458471760797
id1 max-below 0.6028368794326241134751773049645: 0.5724465558194774346793349168646
id4 max-below 0.6028368794326241134751773049645: 0.5591647331786542923433874709977
EPAM120_P failure2:
num: 88
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
pequiv1 max-below 0.9793103448275862068965517241379: 0.9790697674418604651162790697674
id1 max-below 0.6028368794326241134751773049645: 0.5748218527315914489311163895487
id4 max-below 0.6028368794326241134751773049645: 0.5614849187935034802784222737819
Finished!