analyze.align.clustered.pdbs.10.pl ../analyze.align.clustered.pdbs.10.csv ../analyze.align.clustered.pdbs.10.2.csv ../analyze.align.clustered.pdbs.10.3.csv Have 1917 chains in clusters Checking align.clustered.pdbs.output1.bz2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 242, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 242, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 72. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 206. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 213. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 229. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 230. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 231. Finished reading align.clustered.pdbs.output1.bz2 Checking align.clustered.pdbs.output2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 242, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 242, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 72. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 234, chunk 206. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 213. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 229. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 230. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 231. Finished reading align.clustered.pdbs.output2 Checking align.clustered.pdbs.output3 Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 208. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 224. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 225. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 226. Finished reading align.clustered.pdbs.output3 Checking align.clustered.pdbs.output4 Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 42. Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 115. Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 137. Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 146. Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 151. Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 179. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 196. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 204. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 205. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 206. Finished reading align.clustered.pdbs.output4 Checking align.clustered.pdbs.output5 Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 36. Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 109. Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 131. Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 140. Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 146. Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 174. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 191. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 199. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 200. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 201. Finished reading align.clustered.pdbs.output5 Checking align.clustered.pdbs.output6 Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 191. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 199. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 200. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 201. Finished reading align.clustered.pdbs.output6 Checking align.clustered.pdbs.output7 Finished reading align.clustered.pdbs.output7 Checking align.clustered.pdbs.output8 Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 120. Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 286, chunk 122. Problem with 1NH2B 1NH2C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 147. Problem with 1NVPB 1NVPC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 155. Finished reading align.clustered.pdbs.output8 Checking align.clustered.pdbs.2.output1 Finished reading align.clustered.pdbs.2.output1 Checking align.clustered.pdbs.2.output2 Finished reading align.clustered.pdbs.2.output2 Checking align.clustered.pdbs.2.output3 Finished reading align.clustered.pdbs.2.output3 Checking align.clustered.pdbs.2.output4 Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 249. Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 250. Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 255. Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 258. Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 265. Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 272. Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 274. Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 294. Finished reading align.clustered.pdbs.2.output4 Checking align.clustered.pdbs.2.output5 Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 249. Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 250. Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 255. Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 258. Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 265. Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 272. Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 274. Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 250, chunk 289. Finished reading align.clustered.pdbs.2.output5 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2 Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2 Have 887 chain pairs to check, 438 no-difference, 10 skip-output1, 887 successful1, 790 successful2, 449 failure1, 449 failure2, 37 clusters EBLOSUM62_P pequiv_diff: max: 0.8097169999999999999999999999997 mean: 0.06215056712316911926771374317426 EGONNET_P pequiv_diff: max: 0.4608289999999999999999999999998 mean: 0.002670544982344456222867693163152 EIDENT_P pequiv_diff: max: 6.349206 mean: 0.9531114931823984261197889749761 ENUSSINOV_P pequiv_diff: max: 0.9216590000000000000000000000003 mean: 0.06111723772768411695541272344554 EPAM120_P pequiv_diff: max: 1.333333333333333333333333333334 mean: 0.004183405456200236966249705520807 EBLOSUM62_P successful1: num: 304 pequiv1 min: 0.9758064516129032258064516129032 id1 min: 0.5724465558194774346793349168646 id4 min: 0.5591647331786542923433874709977 EGONNET_P successful1: num: 366 pequiv1 min: 0.9758064516129032258064516129032 id1 min: 0.6028368794326241134751773049645 id4 min: 0.6028368794326241134751773049645 EIDENT_P successful1: num: 47 pequiv1 min: 0.9761904761904761904761904761905 id1 min: 0.6589861751152073732718894009217 id4 min: 0.6507936507936507936507936507937 ENUSSINOV_P successful1: num: 269 pequiv1 min: 0.9790697674418604651162790697674 id1 min: 0.6028368794326241134751773049645 id4 min: 0.6028368794326241134751773049645 EPAM120_P successful1: num: 365 pequiv1 min: 0.9758064516129032258064516129032 id1 min: 0.6028368794326241134751773049645 id4 min: 0.6028368794326241134751773049645 EBLOSUM62_P failure1: num: 145 pequiv1 max: 1 id1 max: 0.9929078014184397163120567375887 id4 max: 0.9929078014184397163120567375887 EGONNET_P failure1: num: 83 pequiv1 max: 1 id1 max: 0.9929078014184397163120567375887 id4 max: 0.9929078014184397163120567375887 EIDENT_P failure1: num: 402 pequiv1 max: 1 id1 max: 0.9929078014184397163120567375887 id4 max: 0.9929078014184397163120567375887 ENUSSINOV_P failure1: num: 180 pequiv1 max: 1 id1 max: 1 id4 max: 1 EPAM120_P failure1: num: 84 pequiv1 max: 1 id1 max: 0.9929078014184397163120567375887 id4 max: 0.9929078014184397163120567375887 EBLOSUM62_P successful2: num: 687 pequiv1 min: 0.9793103448275862068965517241379 id1 min: 0.6028368794326241134751773049645 id4 min: 0.6028368794326241134751773049645 EGONNET_P successful2: num: 755 pequiv1 min: 0.9793103448275862068965517241379 id1 min: 0.6028368794326241134751773049645 id4 min: 0.6028368794326241134751773049645 EIDENT_P successful2: num: 448 pequiv1 min: 0.986013986013986013986013986014 id1 min: 0.6589861751152073732718894009217 id4 min: 0.6589861751152073732718894009217 ENUSSINOV_P successful2: num: 676 pequiv1 min: 0.9929824561403508771929824561404 id1 min: 0.6028368794326241134751773049645 id4 min: 0.6028368794326241134751773049645 EPAM120_P successful2: num: 750 pequiv1 min: 0.9793103448275862068965517241379 id1 min: 0.6028368794326241134751773049645 id4 min: 0.6028368794326241134751773049645 EBLOSUM62_P failure2: num: 148 pequiv1 max: 1 id1 max: 0.9929078014184397163120567375887 id4 max: 0.9929078014184397163120567375887 pequiv1 max-below 0.9793103448275862068965517241379: 0.9790697674418604651162790697674 id1 none-below 0.6028368794326241134751773049645 id4 none-below 0.6028368794326241134751773049645 EGONNET_P failure2: num: 86 pequiv1 max: 1 id1 max: 0.9929078014184397163120567375887 id4 max: 0.9929078014184397163120567375887 pequiv1 max-below 0.9793103448275862068965517241379: 0.9790697674418604651162790697674 id1 max-below 0.6028368794326241134751773049645: 0.5748218527315914489311163895487 id4 max-below 0.6028368794326241134751773049645: 0.5614849187935034802784222737819 EIDENT_P failure2: num: 406 pequiv1 max: 1 id1 max: 0.9929078014184397163120567375887 id4 max: 0.9929078014184397163120567375887 pequiv1 max-below 0.986013986013986013986013986014: 0.9857142857142857142857142857143 id1 max-below 0.6589861751152073732718894009217: 0.6588628762541806020066889632107 id4 max-below 0.6589861751152073732718894009217: 0.6578947368421052631578947368421 ENUSSINOV_P failure2: num: 182 pequiv1 max: 1 id1 max: 1 id4 max: 1 pequiv1 max-below 0.9929824561403508771929824561404: 0.9900332225913621262458471760797 id1 max-below 0.6028368794326241134751773049645: 0.5724465558194774346793349168646 id4 max-below 0.6028368794326241134751773049645: 0.5591647331786542923433874709977 EPAM120_P failure2: num: 88 pequiv1 max: 1 id1 max: 0.9929078014184397163120567375887 id4 max: 0.9929078014184397163120567375887 pequiv1 max-below 0.9793103448275862068965517241379: 0.9790697674418604651162790697674 id1 max-below 0.6028368794326241134751773049645: 0.5748218527315914489311163895487 id4 max-below 0.6028368794326241134751773049645: 0.5614849187935034802784222737819 Finished!