analyze.align.clustered.pdbs.11.pl analyze.align.clustered.pdbs.11.txt Have 1917 chains in clusters Checking align.clustered.pdbs.output1.bz2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 184, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 184, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 176, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 176, chunk 72. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 176, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 176, chunk 206. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 213. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 229. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 230. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 231. Finished reading align.clustered.pdbs.output1.bz2 Checking align.clustered.pdbs.output2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 184, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 184, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 176, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 176, chunk 72. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 176, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 176, chunk 206. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 213. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 229. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 230. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 231. Finished reading align.clustered.pdbs.output2 Checking align.clustered.pdbs.output3 Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 208. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 224. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 225. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 226. Finished reading align.clustered.pdbs.output3 Checking align.clustered.pdbs.output4 Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 42. Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 115. Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 137. Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 146. Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 151. Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 179. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 196. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 204. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 205. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 206. Finished reading align.clustered.pdbs.output4 Checking align.clustered.pdbs.output5 Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 36. Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 109. Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 131. Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 140. Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 146. Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 174. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 191. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 199. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 200. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 201. Finished reading align.clustered.pdbs.output5 Checking align.clustered.pdbs.output6 Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 191. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 199. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 200. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 201. Finished reading align.clustered.pdbs.output6 Checking align.clustered.pdbs.output7 Finished reading align.clustered.pdbs.output7 Checking align.clustered.pdbs.output8 Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 120. Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 227, chunk 122. Problem with 1NH2B 1NH2C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 147. Problem with 1NVPB 1NVPC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 155. Finished reading align.clustered.pdbs.output8 Checking align.clustered.pdbs.2.output1 Finished reading align.clustered.pdbs.2.output1 Checking align.clustered.pdbs.2.output2 Finished reading align.clustered.pdbs.2.output2 Checking align.clustered.pdbs.2.output3 Finished reading align.clustered.pdbs.2.output3 Checking align.clustered.pdbs.2.output4 Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 249. Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 250. Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 255. Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 258. Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 265. Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 272. Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 274. Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 294. Finished reading align.clustered.pdbs.2.output4 Checking align.clustered.pdbs.2.output5 Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 249. Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 250. Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 255. Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 258. Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 265. Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 272. Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 274. Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 289. Finished reading align.clustered.pdbs.2.output5 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2 Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2 Checking align.clustered.pdbs.2.output6 Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 249. Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 250. Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 255. Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 258. Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 265. Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 272. Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 289. Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 227, chunk 758. Problem with 1L8BB 1IPBA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 804. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 838. Problem with 2GSRA 4GSSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 850. Problem with 2GSRA 6GSSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 851. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 192, chunk 872. Problem with 1RF8A 1AP80: RMSD 6.05267; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 227, chunk 876. Finished reading align.clustered.pdbs.2.output6 Have 31 clusters with differing flag quality EBLOSUM62_P: 2.333333333333333333333333333333 EGONNET_P: 2.666666666666666666666666666667 EIDENT_P: 3.25 ENUSSINOV_P: 3.083333333333333333333333333333 EPAM120_P: 2.666666666666666666666666666667 Finished!