analyze.align.clustered.pdbs.11.pl analyze.align.clustered.pdbs.11.txt Have 1840 chains in clusters Checking align.clustered.pdbs.output1.bz2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 72. No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 103. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 104. No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 105. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 106. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 206. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 217. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 232. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 233. Finished reading align.clustered.pdbs.output1.bz2 Checking align.clustered.pdbs.output2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 72. No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 103. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 104. No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 105. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 106. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 206. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 217. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 232. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 233. Finished reading align.clustered.pdbs.output2 Checking align.clustered.pdbs.output3 No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 99. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 100. No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 101. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 102. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 212. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 227. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 228. Finished reading align.clustered.pdbs.output3 Checking align.clustered.pdbs.output4 No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 99. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 100. No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 101. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 102. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 200. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 207. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 208. Finished reading align.clustered.pdbs.output4 Checking align.clustered.pdbs.output5 No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 93. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 94. No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 95. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 96. No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 141. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 195. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 202. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 203. Finished reading align.clustered.pdbs.output5 Checking align.clustered.pdbs.output6 No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 93. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 94. No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 95. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 96. No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 141. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 195. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 202. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 203. Finished reading align.clustered.pdbs.output6 Checking align.clustered.pdbs.output7 Finished reading align.clustered.pdbs.output7 Checking align.clustered.pdbs.output8 No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 95. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 96. No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 97. Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 120. Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 122. Problem with 1NH2B 1NH2C: RMSD 6.888221; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 147. Problem with 1NVPB 1NVPC: RMSD 5.691342; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 155. No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 159. Finished reading align.clustered.pdbs.output8 Checking align.clustered.pdbs.2.output1 Finished reading align.clustered.pdbs.2.output1 Checking align.clustered.pdbs.2.output2 Finished reading align.clustered.pdbs.2.output2 Checking align.clustered.pdbs.2.output3 Finished reading align.clustered.pdbs.2.output3 Checking align.clustered.pdbs.2.output4 Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 294. Finished reading align.clustered.pdbs.2.output4 Checking align.clustered.pdbs.2.output5 Finished reading align.clustered.pdbs.2.output5 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 No cluster for either of 1HNA0 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 22. No cluster for either of 1GSUA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 23. No cluster for either of 1GSUA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 24. No cluster for either of 1XW5A 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 25. No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 26. No cluster for either of 1XW5A 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 27. No cluster for either of 1C72A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 32. No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 33. No cluster for either of 1HNA0 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 34. No cluster for either of 1XW5A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 35. Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2 Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2 Checking align.clustered.pdbs.2.output6 Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 758. Problem with 1L8BB 1IPBA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 804. No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 835. No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 836. No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 852. No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 853. No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 854. Problem with 1RF8A 1AP80: RMSD 6.05267; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 876. No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 877. No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 878. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 879. No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 880. No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 881. No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 882. No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 883. No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 884. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 885. No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 886. No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 887. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 888. No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 889. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 890. No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 891. No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 892. No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 893. No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 894. No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 900. No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 901. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 902. No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 903. No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 904. No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 905. No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 906. No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 907. Finished reading align.clustered.pdbs.2.output6 Checking align.clustered.pdbs.2.output7 Problem with 1HL5M 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 291. No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 849. No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 850. No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 866. No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 867. No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 868. No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 890. No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 891. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 892. No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 893. No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 894. No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 895. No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 896. No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 897. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 898. No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 899. No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 900. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 901. No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 902. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 903. No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 904. No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 905. No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 906. No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 907. No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 913. No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 914. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 915. No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 916. No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 917. No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 918. No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 919. No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 920. Finished reading align.clustered.pdbs.2.output7 Checking align.clustered.pdbs.2.output8 No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 853. No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 854. No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 870. No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 871. No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 872. No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 894. No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 895. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 896. No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 897. No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 898. No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 899. No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 900. No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 901. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 902. No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 903. No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 904. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 905. No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 906. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 907. No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 908. No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 909. No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 910. No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 911. No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 917. No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 918. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 919. No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 920. No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 921. No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 922. No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 923. No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 924. Problem with 1SZDA 1Q17C: RMSD 4.921818; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 1046. Problem with 1KNLA 1V0MA: RMSD 8.331653; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 1054. Problem with 1KNMA 1V0MA: RMSD 8.304771; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 1055. Finished reading align.clustered.pdbs.2.output8 Checking align.clustered.pdbs.2.output9 No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 852. No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 853. No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 869. No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 870. No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 871. No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 893. No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 894. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 895. No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 896. No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 897. No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 898. No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 899. No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 900. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 901. No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 902. No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 903. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 904. No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 905. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 906. No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 907. No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 908. No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 909. No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 910. No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 916. No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 917. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 918. No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 919. No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 920. No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 921. No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 922. No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 923. Problem with 1MC9A 1V0MA: RMSD 8.860473; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 1052. Finished reading align.clustered.pdbs.2.output9 Checking align.clustered.pdbs.3.output1 No cluster for either of 1HNA0 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 20. Finished reading align.clustered.pdbs.3.output1 Checking align.clustered.pdbs.3.output2 Finished reading align.clustered.pdbs.3.output2 Checking align.clustered.pdbs.3.output3 Finished reading align.clustered.pdbs.3.output3 Checking align.clustered.pdbs.3.output4 Finished reading align.clustered.pdbs.3.output4 Checking align.clustered.pdbs.3.output5 Finished reading align.clustered.pdbs.3.output5 Checking align.clustered.pdbs.3.output6 Finished reading align.clustered.pdbs.3.output6 Checking align.clustered.pdbs.3.output7 Finished reading align.clustered.pdbs.3.output7 Checking align.clustered.pdbs.3.output8 Finished reading align.clustered.pdbs.3.output8 Checking align.clustered.pdbs.3.output9 Finished reading align.clustered.pdbs.3.output9 Checking align.clustered.pdbs.3.outputA Problem with 1CBJA 1SOSC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 18. No cluster for either of 1GTUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 32. No cluster for either of 1GTUB 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 33. No cluster for either of 1GTUC 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 34. No cluster for either of 1GTUD 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 35. No cluster for either of 1MTCA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 36. No cluster for either of 1MTCB 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 37. No cluster for either of 1XW5A 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 38. No cluster for either of 1XW5A 1XW6B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 39. No cluster for either of 1XW5A 1XW6C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 40. No cluster for either of 1XW5A 1XW6D; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 41. No cluster for either of 1XW5A 1XWKA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 42. No cluster for either of 1XW5A 1XWKB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 43. No cluster for either of 1XW5A 1XWKC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 44. No cluster for either of 1XW5A 1YJ6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 45. No cluster for either of 1XW5A 1YJ6B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 46. No cluster for either of 1XW5A 1YJ6C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 47. No cluster for either of 1XW5A 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 48. No cluster for either of 1XW5A 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 49. No cluster for either of 1XW5A 6GSUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 50. No cluster for either of 1XW5A 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 51. No cluster for either of 1XW5A 6GSVB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 52. No cluster for either of 1XW5A 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 53. No cluster for either of 1XW5A 6GSWB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 54. No cluster for either of 1XW5A 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 55. No cluster for either of 1XW5A 6GSXB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 56. No cluster for either of 1XW5A 6GSYA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 57. No cluster for either of 1XW5A 6GSYB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 58. Finished reading align.clustered.pdbs.3.outputA Checking align.clustered.pdbs.2.outputA No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 879. No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 880. No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 896. No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 897. No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 898. No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 920. No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 921. No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 922. No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 923. No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 924. No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 925. No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 926. No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 927. No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 928. No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 929. No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 930. No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 931. No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 932. No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 933. No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 934. No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 935. No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 936. No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 937. No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 943. No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 944. No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 945. No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 946. No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 947. No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 948. No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 949. No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 950. Finished reading align.clustered.pdbs.2.outputA Checking align.clustered.pdbs.3.outputB No cluster for either of 1C72A 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 12. No cluster for either of 1C72B 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 13. No cluster for either of 1C72C 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 14. No cluster for either of 1C72D 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 15. No cluster for either of 1GTUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 16. No cluster for either of 1GTUB 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 17. No cluster for either of 1GTUC 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 18. No cluster for either of 1GTUD 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 19. No cluster for either of 1HNA0 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 20. No cluster for either of 1HNCA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 21. No cluster for either of 1HNCB 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 22. No cluster for either of 1HNCC 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 23. No cluster for either of 1HNCD 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 24. No cluster for either of 1MTCA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 25. No cluster for either of 1MTCB 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 26. No cluster for either of 1XW6A 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 27. No cluster for either of 1XW6B 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 28. No cluster for either of 1XW6C 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 29. No cluster for either of 1XW6D 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 30. No cluster for either of 1XWKA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 31. No cluster for either of 1XWKB 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 32. No cluster for either of 1XWKC 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 33. No cluster for either of 1YJ6A 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 34. No cluster for either of 1YJ6B 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 35. No cluster for either of 1YJ6C 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 36. No cluster for either of 4GTUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 37. No cluster for either of 4GTUA 6GSUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 38. No cluster for either of 4GTUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 39. No cluster for either of 4GTUA 6GSVB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 40. No cluster for either of 4GTUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 41. No cluster for either of 4GTUA 6GSWB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 42. No cluster for either of 4GTUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 43. No cluster for either of 4GTUA 6GSXB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 44. No cluster for either of 4GTUA 6GSYA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 45. No cluster for either of 4GTUA 6GSYB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 46. Finished reading align.clustered.pdbs.3.outputB Checking align.clustered.pdbs.3.outputC Finished reading align.clustered.pdbs.3.outputC Checking align.clustered.pdbs.3.outputD Finished reading align.clustered.pdbs.3.outputD Checking align.clustered.pdbs.3.outputE Finished reading align.clustered.pdbs.3.outputE Checking align.clustered.pdbs.3.outputF Problem with 1HL5M 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 11. Finished reading align.clustered.pdbs.3.outputF Checking align.clustered.pdbs.3.outputG Finished reading align.clustered.pdbs.3.outputG Checking align.clustered.pdbs.3.outputH Finished reading align.clustered.pdbs.3.outputH Checking align.clustered.pdbs.3.outputI Finished reading align.clustered.pdbs.3.outputI Checking align.clustered.pdbs.3.outputJ Finished reading align.clustered.pdbs.3.outputJ Checking align.clustered.pdbs.3.outputK Finished reading align.clustered.pdbs.3.outputK Checking align.clustered.pdbs.3.outputL Problem with 1HL5M 1SXBA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 2. Finished reading align.clustered.pdbs.3.outputL Checking align.clustered.pdbs.3.outputM Finished reading align.clustered.pdbs.3.outputM Checking align.clustered.pdbs.3.outputN Finished reading align.clustered.pdbs.3.outputN Checking align.clustered.pdbs.3.outputO Different clusters for 1KM4A (1KM4A) 1L2UA (1L2UA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 15. Different clusters for 1KM4A (1KM4A) 1EIXC (1L2UA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 16. Finished reading align.clustered.pdbs.3.outputO Checking align.clustered.pdbs.3.outputP Finished reading align.clustered.pdbs.3.outputP Checking align.clustered.pdbs.3.outputQ Finished reading align.clustered.pdbs.3.outputQ Checking align.clustered.pdbs.3.outputR Finished reading align.clustered.pdbs.3.outputR Checking align.clustered.pdbs.3.outputS Finished reading align.clustered.pdbs.3.outputS Checking align.clustered.pdbs.3.outputT Finished reading align.clustered.pdbs.3.outputT Checking align.clustered.pdbs.3.outputV Finished reading align.clustered.pdbs.3.outputV Checking align.clustered.pdbs.3.outputU Finished reading align.clustered.pdbs.3.outputU Checking align.clustered.pdbs.3.outputX Finished reading align.clustered.pdbs.3.outputX Checking align.clustered.pdbs.3.outputY Finished reading align.clustered.pdbs.3.outputY Checking align.clustered.pdbs.3.outputZ Finished reading align.clustered.pdbs.3.outputZ Checking align.clustered.pdbs.3.output10 Finished reading align.clustered.pdbs.3.output10 Checking align.clustered.pdbs.3.output11 Finished reading align.clustered.pdbs.3.output11 Checking align.clustered.pdbs.3.output12 Finished reading align.clustered.pdbs.3.output12 Checking align.clustered.pdbs.3.output13 Finished reading align.clustered.pdbs.3.output13 Checking align.clustered.pdbs.3.output14 Problem with 1OZTH 1P1VA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 7. Problem with 1OZTI 1P1VA: RMSD 2.529759; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 8. Problem with 1OZTJ 1P1VA: RMSD 2.44843; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 9. Finished reading align.clustered.pdbs.3.output14 Checking align.clustered.pdbs.3.output15 Finished reading align.clustered.pdbs.3.output15 Checking align.clustered.pdbs.3.output16 Finished reading align.clustered.pdbs.3.output16 Checking align.clustered.pdbs.3.output17 Problem with 1OZTH 1P1VC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 5. Problem with 1OZTI 1P1VC: RMSD 2.53115; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 6. Problem with 1OZTJ 1P1VC: RMSD 2.448993; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 7. Finished reading align.clustered.pdbs.3.output17 Checking align.clustered.pdbs.3.output18 Finished reading align.clustered.pdbs.3.output18 Checking align.clustered.pdbs.3.output19 Finished reading align.clustered.pdbs.3.output19 Checking align.clustered.pdbs.3.output20 Finished reading align.clustered.pdbs.3.output20 Checking align.clustered.pdbs.3.output21 Finished reading align.clustered.pdbs.3.output21 Checking align.clustered.pdbs.3.output22 Finished reading align.clustered.pdbs.3.output22 Checking align.clustered.pdbs.3.output23 Finished reading align.clustered.pdbs.3.output23 Checking align.clustered.pdbs.3.output26 Problem with 1OZTL 1OZTJ: RMSD 2.615833; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 18. Problem with 1OZUB 1OZTJ: RMSD 2.234835; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 20. Problem with 1OZTJ 1P1VB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 21. Problem with 1OZTI 1P1VB: RMSD 2.373934; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 27. Finished reading align.clustered.pdbs.3.output26 Checking align.clustered.pdbs.3.output24 Finished reading align.clustered.pdbs.3.output24 Checking align.clustered.pdbs.3.output25 Finished reading align.clustered.pdbs.3.output25 Checking align.clustered.pdbs.3.output29 Finished reading align.clustered.pdbs.3.output29 Checking align.clustered.pdbs.3.output28 Finished reading align.clustered.pdbs.3.output28 Checking align.clustered.pdbs.3.output27 Finished reading align.clustered.pdbs.3.output27 Checking align.clustered.pdbs.3.output31 Finished reading align.clustered.pdbs.3.output31 Checking align.clustered.pdbs.3.output30 Finished reading align.clustered.pdbs.3.output30 Checking align.clustered.pdbs.3.output32 Finished reading align.clustered.pdbs.3.output32 Checking align.clustered.pdbs.3.output34 Finished reading align.clustered.pdbs.3.output34 Checking align.clustered.pdbs.3.output33 Finished reading align.clustered.pdbs.3.output33 Have 22 clusters with successful flags, 23 clusters with unsuccessful flags EBLOSUM62_P: 4.666666666666666666666666666667 EGONNET_P: 4.333333333333333333333333333333 EIDENT_P: 3.833333333333333333333333333333 ENUSSINOV_P: 3.5 EPAM120_P: 5.666666666666666666666666666667 Finished!