analyze.align.clustered.pdbs.11.pl analyze.align.clustered.pdbs.11.txt
Have 1840 chains in clusters
Checking align.clustered.pdbs.output1.bz2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 72.
No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 103.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 104.
No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 105.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 106.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 206.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 217.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 232.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 233.
Finished reading align.clustered.pdbs.output1.bz2
Checking align.clustered.pdbs.output2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 72.
No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 103.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 104.
No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 105.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 106.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 206.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 217.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 232.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 233.
Finished reading align.clustered.pdbs.output2
Checking align.clustered.pdbs.output3
No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 99.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 100.
No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 101.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 102.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 212.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 227.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 228.
Finished reading align.clustered.pdbs.output3
Checking align.clustered.pdbs.output4
No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 99.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 100.
No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 101.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 102.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 200.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 207.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 208.
Finished reading align.clustered.pdbs.output4
Checking align.clustered.pdbs.output5
No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 93.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 94.
No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 95.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 96.
No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 141.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 195.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 202.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 203.
Finished reading align.clustered.pdbs.output5
Checking align.clustered.pdbs.output6
No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 93.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 94.
No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 95.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 96.
No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 141.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 195.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 202.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 203.
Finished reading align.clustered.pdbs.output6
Checking align.clustered.pdbs.output7
Finished reading align.clustered.pdbs.output7
Checking align.clustered.pdbs.output8
No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 95.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 96.
No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 97.
Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 120.
Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 122.
Problem with 1NH2B 1NH2C: RMSD 6.888221; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 147.
Problem with 1NVPB 1NVPC: RMSD 5.691342; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 155.
No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 159.
Finished reading align.clustered.pdbs.output8
Checking align.clustered.pdbs.2.output1
Finished reading align.clustered.pdbs.2.output1
Checking align.clustered.pdbs.2.output2
Finished reading align.clustered.pdbs.2.output2
Checking align.clustered.pdbs.2.output3
Finished reading align.clustered.pdbs.2.output3
Checking align.clustered.pdbs.2.output4
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 294.
Finished reading align.clustered.pdbs.2.output4
Checking align.clustered.pdbs.2.output5
Finished reading align.clustered.pdbs.2.output5
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
No cluster for either of 1HNA0 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 22.
No cluster for either of 1GSUA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 23.
No cluster for either of 1GSUA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 24.
No cluster for either of 1XW5A 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 25.
No cluster for either of 1GSUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 26.
No cluster for either of 1XW5A 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 27.
No cluster for either of 1C72A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 32.
No cluster for either of 1GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 33.
No cluster for either of 1HNA0 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 34.
No cluster for either of 1XW5A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 35.
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2
Checking align.clustered.pdbs.2.output6
Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 758.
Problem with 1L8BB 1IPBA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 804.
No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 835.
No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 836.
No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 852.
No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 853.
No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 854.
Problem with 1RF8A 1AP80: RMSD 6.05267; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 876.
No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 877.
No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 878.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 879.
No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 880.
No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 881.
No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 882.
No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 883.
No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 884.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 885.
No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 886.
No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 887.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 888.
No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 889.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 890.
No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 891.
No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 892.
No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 893.
No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 894.
No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 900.
No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 901.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 902.
No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 903.
No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 904.
No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 905.
No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 906.
No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 907.
Finished reading align.clustered.pdbs.2.output6
Checking align.clustered.pdbs.2.output7
Problem with 1HL5M 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 291.
No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 849.
No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 850.
No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 866.
No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 867.
No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 868.
No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 890.
No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 891.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 892.
No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 893.
No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 894.
No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 895.
No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 896.
No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 897.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 898.
No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 899.
No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 900.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 901.
No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 902.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 903.
No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 904.
No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 905.
No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 906.
No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 907.
No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 913.
No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 914.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 915.
No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 916.
No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 917.
No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 918.
No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 919.
No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 920.
Finished reading align.clustered.pdbs.2.output7
Checking align.clustered.pdbs.2.output8
No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 853.
No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 854.
No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 870.
No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 871.
No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 872.
No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 894.
No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 895.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 896.
No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 897.
No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 898.
No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 899.
No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 900.
No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 901.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 902.
No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 903.
No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 904.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 905.
No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 906.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 907.
No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 908.
No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 909.
No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 910.
No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 911.
No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 917.
No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 918.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 919.
No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 920.
No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 921.
No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 922.
No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 923.
No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 924.
Problem with 1SZDA 1Q17C: RMSD 4.921818; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 1046.
Problem with 1KNLA 1V0MA: RMSD 8.331653; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 1054.
Problem with 1KNMA 1V0MA: RMSD 8.304771; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 1055.
Finished reading align.clustered.pdbs.2.output8
Checking align.clustered.pdbs.2.output9
No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 852.
No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 853.
No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 869.
No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 870.
No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 871.
No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 893.
No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 894.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 895.
No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 896.
No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 897.
No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 898.
No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 899.
No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 900.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 901.
No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 902.
No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 903.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 904.
No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 905.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 906.
No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 907.
No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 908.
No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 909.
No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 910.
No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 916.
No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 917.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 918.
No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 919.
No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 920.
No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 921.
No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 922.
No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 923.
Problem with 1MC9A 1V0MA: RMSD 8.860473; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 1052.
Finished reading align.clustered.pdbs.2.output9
Checking align.clustered.pdbs.3.output1
No cluster for either of 1HNA0 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 20.
Finished reading align.clustered.pdbs.3.output1
Checking align.clustered.pdbs.3.output2
Finished reading align.clustered.pdbs.3.output2
Checking align.clustered.pdbs.3.output3
Finished reading align.clustered.pdbs.3.output3
Checking align.clustered.pdbs.3.output4
Finished reading align.clustered.pdbs.3.output4
Checking align.clustered.pdbs.3.output5
Finished reading align.clustered.pdbs.3.output5
Checking align.clustered.pdbs.3.output6
Finished reading align.clustered.pdbs.3.output6
Checking align.clustered.pdbs.3.output7
Finished reading align.clustered.pdbs.3.output7
Checking align.clustered.pdbs.3.output8
Finished reading align.clustered.pdbs.3.output8
Checking align.clustered.pdbs.3.output9
Finished reading align.clustered.pdbs.3.output9
Checking align.clustered.pdbs.3.outputA
Problem with 1CBJA 1SOSC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 18.
No cluster for either of 1GTUA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 32.
No cluster for either of 1GTUB 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 33.
No cluster for either of 1GTUC 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 34.
No cluster for either of 1GTUD 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 35.
No cluster for either of 1MTCA 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 36.
No cluster for either of 1MTCB 1XW5A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 37.
No cluster for either of 1XW5A 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 38.
No cluster for either of 1XW5A 1XW6B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 39.
No cluster for either of 1XW5A 1XW6C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 40.
No cluster for either of 1XW5A 1XW6D; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 41.
No cluster for either of 1XW5A 1XWKA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 42.
No cluster for either of 1XW5A 1XWKB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 43.
No cluster for either of 1XW5A 1XWKC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 44.
No cluster for either of 1XW5A 1YJ6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 45.
No cluster for either of 1XW5A 1YJ6B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 46.
No cluster for either of 1XW5A 1YJ6C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 47.
No cluster for either of 1XW5A 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 48.
No cluster for either of 1XW5A 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 49.
No cluster for either of 1XW5A 6GSUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 50.
No cluster for either of 1XW5A 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 51.
No cluster for either of 1XW5A 6GSVB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 52.
No cluster for either of 1XW5A 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 53.
No cluster for either of 1XW5A 6GSWB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 54.
No cluster for either of 1XW5A 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 55.
No cluster for either of 1XW5A 6GSXB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 56.
No cluster for either of 1XW5A 6GSYA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 57.
No cluster for either of 1XW5A 6GSYB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 58.
Finished reading align.clustered.pdbs.3.outputA
Checking align.clustered.pdbs.2.outputA
No cluster for either of 1OE7B 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 879.
No cluster for either of 1OE8A 1OE8B; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 880.
No cluster for either of 1OE7B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 896.
No cluster for either of 1OE8A 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 897.
No cluster for either of 1OE8B 1U3IA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 898.
No cluster for either of 1GSUA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 920.
No cluster for either of 1GSUA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 921.
No cluster for either of 1GSUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 922.
No cluster for either of 1GSUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 923.
No cluster for either of 1GSUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 924.
No cluster for either of 1GSUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 925.
No cluster for either of 1GSUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 926.
No cluster for either of 2GSTA 1C72A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 927.
No cluster for either of 1GSUA 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 928.
No cluster for either of 2GSTA 1HNA0; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 929.
No cluster for either of 2GSTA 1MTCA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 930.
No cluster for either of 1XW5A 2GSTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 931.
No cluster for either of 2GSTA 1XW6A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 932.
No cluster for either of 2GSTA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 933.
No cluster for either of 2GSTA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 934.
No cluster for either of 2GSTA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 935.
No cluster for either of 2GSTA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 936.
No cluster for either of 2GSTA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 937.
No cluster for either of 1MTCA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 943.
No cluster for either of 1XW6A 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 944.
No cluster for either of 2GSTA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 945.
No cluster for either of 4GTUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 946.
No cluster for either of 6GSUA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 947.
No cluster for either of 6GSVA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 948.
No cluster for either of 6GSWA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 949.
No cluster for either of 6GSXA 3GTUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 950.
Finished reading align.clustered.pdbs.2.outputA
Checking align.clustered.pdbs.3.outputB
No cluster for either of 1C72A 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 12.
No cluster for either of 1C72B 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 13.
No cluster for either of 1C72C 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 14.
No cluster for either of 1C72D 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 15.
No cluster for either of 1GTUA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 16.
No cluster for either of 1GTUB 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 17.
No cluster for either of 1GTUC 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 18.
No cluster for either of 1GTUD 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 19.
No cluster for either of 1HNA0 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 20.
No cluster for either of 1HNCA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 21.
No cluster for either of 1HNCB 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 22.
No cluster for either of 1HNCC 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 23.
No cluster for either of 1HNCD 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 24.
No cluster for either of 1MTCA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 25.
No cluster for either of 1MTCB 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 26.
No cluster for either of 1XW6A 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 27.
No cluster for either of 1XW6B 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 28.
No cluster for either of 1XW6C 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 29.
No cluster for either of 1XW6D 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 30.
No cluster for either of 1XWKA 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 31.
No cluster for either of 1XWKB 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 32.
No cluster for either of 1XWKC 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 33.
No cluster for either of 1YJ6A 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 34.
No cluster for either of 1YJ6B 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 35.
No cluster for either of 1YJ6C 4GTUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 36.
No cluster for either of 4GTUA 6GSUA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 37.
No cluster for either of 4GTUA 6GSUB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 38.
No cluster for either of 4GTUA 6GSVA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 39.
No cluster for either of 4GTUA 6GSVB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 40.
No cluster for either of 4GTUA 6GSWA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 41.
No cluster for either of 4GTUA 6GSWB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 42.
No cluster for either of 4GTUA 6GSXA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 43.
No cluster for either of 4GTUA 6GSXB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 44.
No cluster for either of 4GTUA 6GSYA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 45.
No cluster for either of 4GTUA 6GSYB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 273, chunk 46.
Finished reading align.clustered.pdbs.3.outputB
Checking align.clustered.pdbs.3.outputC
Finished reading align.clustered.pdbs.3.outputC
Checking align.clustered.pdbs.3.outputD
Finished reading align.clustered.pdbs.3.outputD
Checking align.clustered.pdbs.3.outputE
Finished reading align.clustered.pdbs.3.outputE
Checking align.clustered.pdbs.3.outputF
Problem with 1HL5M 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 11.
Finished reading align.clustered.pdbs.3.outputF
Checking align.clustered.pdbs.3.outputG
Finished reading align.clustered.pdbs.3.outputG
Checking align.clustered.pdbs.3.outputH
Finished reading align.clustered.pdbs.3.outputH
Checking align.clustered.pdbs.3.outputI
Finished reading align.clustered.pdbs.3.outputI
Checking align.clustered.pdbs.3.outputJ
Finished reading align.clustered.pdbs.3.outputJ
Checking align.clustered.pdbs.3.outputK
Finished reading align.clustered.pdbs.3.outputK
Checking align.clustered.pdbs.3.outputL
Problem with 1HL5M 1SXBA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 2.
Finished reading align.clustered.pdbs.3.outputL
Checking align.clustered.pdbs.3.outputM
Finished reading align.clustered.pdbs.3.outputM
Checking align.clustered.pdbs.3.outputN
Finished reading align.clustered.pdbs.3.outputN
Checking align.clustered.pdbs.3.outputO
Different clusters for 1KM4A (1KM4A) 1L2UA (1L2UA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 15.
Different clusters for 1KM4A (1KM4A) 1EIXC (1L2UA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 265, chunk 16.
Finished reading align.clustered.pdbs.3.outputO
Checking align.clustered.pdbs.3.outputP
Finished reading align.clustered.pdbs.3.outputP
Checking align.clustered.pdbs.3.outputQ
Finished reading align.clustered.pdbs.3.outputQ
Checking align.clustered.pdbs.3.outputR
Finished reading align.clustered.pdbs.3.outputR
Checking align.clustered.pdbs.3.outputS
Finished reading align.clustered.pdbs.3.outputS
Checking align.clustered.pdbs.3.outputT
Finished reading align.clustered.pdbs.3.outputT
Checking align.clustered.pdbs.3.outputV
Finished reading align.clustered.pdbs.3.outputV
Checking align.clustered.pdbs.3.outputU
Finished reading align.clustered.pdbs.3.outputU
Checking align.clustered.pdbs.3.outputX
Finished reading align.clustered.pdbs.3.outputX
Checking align.clustered.pdbs.3.outputY
Finished reading align.clustered.pdbs.3.outputY
Checking align.clustered.pdbs.3.outputZ
Finished reading align.clustered.pdbs.3.outputZ
Checking align.clustered.pdbs.3.output10
Finished reading align.clustered.pdbs.3.output10
Checking align.clustered.pdbs.3.output11
Finished reading align.clustered.pdbs.3.output11
Checking align.clustered.pdbs.3.output12
Finished reading align.clustered.pdbs.3.output12
Checking align.clustered.pdbs.3.output13
Finished reading align.clustered.pdbs.3.output13
Checking align.clustered.pdbs.3.output14
Problem with 1OZTH 1P1VA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 7.
Problem with 1OZTI 1P1VA: RMSD 2.529759; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 8.
Problem with 1OZTJ 1P1VA: RMSD 2.44843; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 9.
Finished reading align.clustered.pdbs.3.output14
Checking align.clustered.pdbs.3.output15
Finished reading align.clustered.pdbs.3.output15
Checking align.clustered.pdbs.3.output16
Finished reading align.clustered.pdbs.3.output16
Checking align.clustered.pdbs.3.output17
Problem with 1OZTH 1P1VC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 5.
Problem with 1OZTI 1P1VC: RMSD 2.53115; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 6.
Problem with 1OZTJ 1P1VC: RMSD 2.448993; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 7.
Finished reading align.clustered.pdbs.3.output17
Checking align.clustered.pdbs.3.output18
Finished reading align.clustered.pdbs.3.output18
Checking align.clustered.pdbs.3.output19
Finished reading align.clustered.pdbs.3.output19
Checking align.clustered.pdbs.3.output20
Finished reading align.clustered.pdbs.3.output20
Checking align.clustered.pdbs.3.output21
Finished reading align.clustered.pdbs.3.output21
Checking align.clustered.pdbs.3.output22
Finished reading align.clustered.pdbs.3.output22
Checking align.clustered.pdbs.3.output23
Finished reading align.clustered.pdbs.3.output23
Checking align.clustered.pdbs.3.output26
Problem with 1OZTL 1OZTJ: RMSD 2.615833; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 18.
Problem with 1OZUB 1OZTJ: RMSD 2.234835; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 20.
Problem with 1OZTJ 1P1VB; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 279, chunk 21.
Problem with 1OZTI 1P1VB: RMSD 2.373934; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 315, chunk 27.
Finished reading align.clustered.pdbs.3.output26
Checking align.clustered.pdbs.3.output24
Finished reading align.clustered.pdbs.3.output24
Checking align.clustered.pdbs.3.output25
Finished reading align.clustered.pdbs.3.output25
Checking align.clustered.pdbs.3.output29
Finished reading align.clustered.pdbs.3.output29
Checking align.clustered.pdbs.3.output28
Finished reading align.clustered.pdbs.3.output28
Checking align.clustered.pdbs.3.output27
Finished reading align.clustered.pdbs.3.output27
Checking align.clustered.pdbs.3.output31
Finished reading align.clustered.pdbs.3.output31
Checking align.clustered.pdbs.3.output30
Finished reading align.clustered.pdbs.3.output30
Checking align.clustered.pdbs.3.output32
Finished reading align.clustered.pdbs.3.output32
Checking align.clustered.pdbs.3.output34
Finished reading align.clustered.pdbs.3.output34
Checking align.clustered.pdbs.3.output33
Finished reading align.clustered.pdbs.3.output33
Have 22 clusters with successful flags, 23 clusters with unsuccessful flags
EBLOSUM62_P: 4.666666666666666666666666666667
EGONNET_P: 4.333333333333333333333333333333
EIDENT_P: 3.833333333333333333333333333333
ENUSSINOV_P: 3.5
EPAM120_P: 5.666666666666666666666666666667
Finished!